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  SLAGs and Mutants

Gene names GenBank Locus name Effect Pathway Pubmed Species Evidence Mutant Ecotype Mutagenesis type Dominance Description
ABI3AT3G24650enhance Hormone ABA 12231895;19754639 Arabidopsis thaliana Genetic evidence abi3-5 Col-0 T-DNA recessive The Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3) have impaired seed maturation and quickly lose seed viability. abi3-5 and lec1-3 were used as sensitized genetic backgrounds for the study of seed longevity.
AP2AT4G36920enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence ap2-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
ASPG1AT3G18490enhance Aspartic Protease 29648652 Arabidopsis thaliana Genetic evidence aspg1-1 Col-0 T-DNA recessive Aspg1-1 mutants have enhanced seed dormancy and reduced seed viability
AtAP2/EREBPAT4G36920enhance 23929721 Arabidopsis thaliana Molecular evidence ETHYLENE RESPONSE ELEMENT BINDING PROTEIN (AtAP2/EREBP)
AtCHLAT3G47860enhance peroxidation 23837879 Arabidopsis thaliana Genetic evidence AtCHL KO Col-0 T-DNA recessive Seeds of the AtCHL-overexpressing Comp line were even more resistant to ageing than WT seeds
AtDLAH AT1G30370enhance phospholipase 21856645 Arabidopsis thaliana Genetic evidence 35S:AtDLAH Col-0 transgene dominance AtDLAH-overexpressing transgenic seeds (35S:AtDLAH) were markedly tolerant to accelerated-ageing treatment and thus had higher germination percentages than wild-type seeds
AtFAHD1aAT4G15940decrease ROS 33804275 Arabidopsis thaliana Genetic evidence Atfahd1a-1 Col-0 T-DNA recessive Compared to the WT, an A. thaliana T-DNA insertional line (Atfahd1a-1) had extended seed longevity and shallower thermo-dormancy.
ATHA2-1AT3G08030unclear molecular marker 22975286 Arabidopsis thaliana Molecular evidence The mRNA of this gene is expressed in viable seeds. Its detection in a dry seed lot has potential for use as a molecular marker for germination performance as absence of expression correlates with decreased germination. Encodes DUF642 cell wall protein.
ATHB22AT2G36610enhance Hormone, GA, HB TF 24335333 Arabidopsis thaliana Genetic evidence athb22 Col-0 T-DNA recessive Simultaneous knockdown of ATHB25, ATHB22, and ATHB31 expression decreases seed longevity
ATHB25AT5G65410enhance Hormone, GA, HB TF 24335333 Arabidopsis thaliana Genetic evidence athb25-1D Col-0 transgene dominance Overexpression of ATHB25 Increases Seed Longevity
ATHB31AT1G14440enhance Hormone, GA, HB TF 24335333 Arabidopsis thaliana Genetic evidence athb31 Col-0 T-DNA recessive Simultaneous knockdown of ATHB25, ATHB22, and ATHB31 expression decreases seed longevity
AtHSFA9AT5G54070enhance TF HSF 32683703 Arabidopsis thaliana Genetic evidence hsfa9 Col-0 T-DNA recessive Decreased germination of mature seeds from athsfa9 compared with Col-0 after accelerated aging.
AtHSL1AT1G28440enhance LRR-RLK 35763091 Arabidopsis thaliana Genetic evidence hsk1 Col-0 T-DNA recessive Arabidopsis HAESA-like 1 (AtHSL1) positively regulated seed longevity.LRR-RLK protein involved in seed longevity. Induced by aging, mutant seeds show decreased germination rate upon aging treatment
AtOGG1AT1G21710enhance DNA repair 22473985 Arabidopsis thaliana Genetic evidence AtOGG1-OE Col-0 transgene dominance Overexpression of AtOGG1 in Arabidopsis enhanced seed resistance to controlled deterioration treatment.
AtPARP3AT5G22470 enhance DNA repair 24533577 Arabidopsis thaliana Genetic evidence parp3-1 Col-0 T-DNA recessive Stored parp3-1 mutant seeds lacking AtPARP3 expression displayed a delay in germination as compared to Col-0 wild-type seeds. A controlled deterioration test showed that the mutant seeds were hypersensitive to unfavourable storage conditions. The results demonstrate that AtPARP3 is an important component of seed storability and viability.
ATSAT5G42630enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence ats Ler EMS recessive Recessive aberrant testa shape (ats) gene showed a reduced germination capacity and a higher rate of seedling abnormalities than their WT
AtSIP2 AT3G57520decrease Raffinose family oligosaccharides 34553917 Arabidopsis thaliana Genetic evidence atsip2 Col-0 T-DNA recessive AtSIP2encodes alkaline α-galactosidase. Knock out of the AtSIP2 (the ZmAGA1 homolog) in Arabidopsis enhanced the seed aging tolerance.
AtTIL AT5G58070enhance peroxidation 23837879 Arabidopsis thaliana Genetic evidence AtTIL KO Col-0 T-DNA recessive TEMPERATURE-INDUCED LIPOCALIN
BG14AT2G27500enhance Hormone ABA 36625794 Arabidopsis thaliana Genetic evidence bg14 Col-0 T-DNA recessive The loss of function of BG14 significantly decreased seed longevity, whereas functional reversion (RE) and overexpression (OE) lines reversed and increased the impaired phenotype, respectively. T
BSRA5AT2G18030 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE A5, MSRA5
CDF4AT2G34140enhance Hormone GA 27227784 Arabidopsis thaliana Genetic evidence cdf4-1D Col-0 activation-tagging dominance two activation-tagging mutants of Arabidopsis thaliana, cog1-2D and cdf4-1D, with improved seed tolerance to deterioration linked to increased expression of COG1/DOF1.5 and CDF4/DOF2.3, respectively
COG1AT1G29160enhance ROS,DOF TF 31600827;27227784 Arabidopsis thaliana Genetic evidence cog1-2D Col-0 transgene dominance cog1-2D, a gain-of-function mutant with increased seed longevity
CRUAAT5G44120enhance seed storage protein 26184996 Arabidopsis thaliana Genetic evidence crua crub cruc Col-0 T-DNA recessive The effect of cruciferin content on seed longevity was even more apparent in the?crua crub cruc?triple mutant which was very sensitive to artificial ageing
CRUBAT1G03880enhance seed storage protein 26184996 Arabidopsis thaliana Genetic evidence crua crub cruc Col-0 T-DNA recessive The effect of cruciferin content on seed longevity was even more apparent in the?crua crub cruc?triple mutant which was very sensitive to artificial ageing
CRUCAT4G28520enhance seed storage protein 26184996 Arabidopsis thaliana Genetic evidence crua crub cruc Col-0 T-DNA recessive The effect of cruciferin content on seed longevity was even more apparent in the?crua crub cruc?triple mutant which was very sensitive to artificial ageing
CYP86A8AT2G45970enhance seed permeability 32519347 Arabidopsis thaliana Genetic evidence cyp86a8 Col-0 T-DNA recessive Seeds of cyp86a8 showed a drastic reduction in their germination after 1?year of seed dry storage, which is also observed during AAT and CDT treatments
DHAR1AT1G19570enhance ROS 32519347 Arabidopsis thaliana Genetic evidence dhar1 Col-0 T-DNA recessive After 1?year of NAT treatment, dhar1 seeds already lost part of their germination ability, while dhar2 and dhar3 mutant seeds did not.
DOF4.1 AT4G00940decrease DOF TF 35845633 Arabidopsis thaliana Genetic evidence dof4.1 Col-0 T-DNA recessive Dof-type zinc finger DNA-binding family protein. Mutants show enhanced seed longevity due to increased seed storage protein accumulation and reduced seed coat permeabilty.. dof4.1 loss-of-function plants generate seeds exhibiting higher germination after accelerated aging assays
DOG1AT5G45830enhance Hormone, ABA 17065317 Arabidopsis thaliana Genetic evidence dog1 Col-0 EMS recessive The non-dormant dog1 (delay of germination1) mutant showed reduced seed longevity phenotypes
ERCC1AT3G05210enhance DNA repair 35858436 Arabidopsis thaliana Genetic evidence ercc1-1 Col-0 T-DNA recessive After accelerated aging, mutant seed exhibited lower levelsof germination than wild-type controls.
GA3OX2AT1G80340enhance Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence GA3OX2-OE Col-0 transgene dominance GIBBERELLIC ACID3-OXIDASE2
GAAS5AT5G45830enhance Hormone, ABA 23085841 Arabidopsis thaliana Molecular evidence GERMINATION ABILITY AFTER STORAGE 5
GL2AT1G79840enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence gl2-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
GOLS1AT2G47180enhance marker 26993241 Arabidopsis thaliana Genetic evidence gols1 gols2 Col-0 T-DNA recessive The mutants gols2 and gols1gols2 were the only mutants that showed a significantly reduced seed longevity,
GOLS2AT1G56600enhance marker 26993241 Arabidopsis thaliana Genetic evidence gols2 Col-0 T-DNA recessive The mutants gols2 and gols1gols2 were the only mutants that showed a significantly reduced seed longevity,
KNAT7 AT1G62990decrease TF 32519347 Arabidopsis thaliana Genetic evidence knat7 Col-0 T-DNA recessive Loss of function increases seed longevity.
KU70AT1G16970enhance DNA repair 35858436 Arabidopsis thaliana Genetic evidence ku70-1 Col-0 T-DNA recessive After accelerated aging, mutant seed exhibited lower levelsof germination than wild-type controls.
LEC1AT1G21970enhance NF-YB TF 19754639 Arabidopsis thaliana Genetic evidence lec1-3 The Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3) have impaired seed maturation and quickly lose seed viability. abi3-5 and lec1-3 were used as sensitized genetic backgrounds for the study of seed longevity.
LIG4AT5G57160enhance DNA repair 20584150 Arabidopsis thaliana Genetic evidence lig4lig6 Col-0 T-DNA recessive High sensitivity of the lig6 mutant and the lig6 lig4 double mutant to seed ageing
LIG6 AT1G66730enhance DNA repair 20584150 Arabidopsis thaliana Genetic evidence lig4 Col-0 T-DNA recessive High sensitivity of the lig6 mutant and the lig6 lig4 double mutant to seed ageing
LOX1AT1G55020decrease Lipid Oxidation 28371855 Arabidopsis thaliana Genetic evidence lox1 Col-0 T-DNA recessive the germination of aged lox1 seeds was slightly higher than in the wild type
MSRA1AT5G61640 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE 1, MSRA1
MSRA2AT5G07460 unclear Protein repair 23401556 Arabidopsis thaliana Genetic evidence pmsr2-1 Col-0 Em/Spm transposon recessive METHIONINE SULFOXIDE REDUCTASE 2, MSRA2
MSRA3AT5G07470 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE 3, MSRA3
MSRA4AT4G25130 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE A4, MSRA4
MSRB1AT1G53670 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B 1, MSRB1
MSRB3AT4G04800 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B3, MSRB3
MSRB4AT4G04810 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B4, MSRB4
MSRB5AT4G04830 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B5, MSRB5
MSRB6AT4G04840 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B6, MSRB6
MSRB7AT4G21830 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B7, MSRB7
MSRB8AT4G21840 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B8, MSRB8
MSRB9AT4G21850 unclear Protein repair 23401556 Arabidopsis thaliana Molecular evidence METHIONINE SULFOXIDE REDUCTASE B9, MSRB9
MYB47AT1G18710enhance MYB TF 32519347 Arabidopsis thaliana Genetic evidence myb47 Col-0 T-DNA recessive Loss of function decreases seed longevity.
NADP-MEAT2G19900enhance Enzyme 29744896 Arabidopsis thaliana Genetic evidence nadp-me1 Col-0 T-DNA recessive nadp-me1 also showed a significant reduction in seed longevity
NYC1AT4G13250enhance Hormone ABA 22751379 Arabidopsis thaliana Genetic evidence nyc1 Col-0 T-DNA recessive chlorophyll degradation is induced by ABA during seed maturation to produce storable seeds
PARP1AT2G31320enhance DNA repair 35858436 Arabidopsis thaliana Genetic evidence arp1-1 Col-0 T-DNA recessive After accelerated aging, mutant seed exhibited lower levelsof germination than wild-type controls.
PHYAAT1G09570decrease light 27227784 Arabidopsis thaliana Genetic evidence phyA Col-0 T-DNA recessive phyA and phyB mutants exhibit increased seed tolerance to deterioration
PHYBAT2G18790decrease light 27227784 Arabidopsis thaliana Genetic evidence phyB Col-0 T-DNA recessive phyA and phyB mutants exhibit increased seed tolerance to deterioration
PIMT1AT3G48330enhance Protein repair 19011119 Arabidopsis thaliana Genetic evidence pimt1-1 Col-0 T-DNA recessive Over-expression of PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE1 (PIMT1) enhances seed longevity and germination vigour in Arabidopsis
PRX2AT1G05250enhance ROS 31600827 Arabidopsis thaliana Genetic evidence prx2 prx25 prx71? Col-0 T-DNA recessive After controlled deterioration treatment, seeds from the prx2 prx25 double and prx2 prx25 prx71 triple mutant plants presented lower germination than wild-type plants
PRX25AT2G41480enhance ROS 31600827 Arabidopsis thaliana Genetic evidence prx2 prx25 prx71? Col-0 T-DNA recessive After controlled deterioration treatment, seeds from the prx2 prx25 double and prx2 prx25 prx71 triple mutant plants presented lower germination than wild-type plants
PRX71AT5G64120enhance ROS 31600827 Arabidopsis thaliana Genetic evidence prx2 prx25 prx71? Col-0 T-DNA recessive After controlled deterioration treatment, seeds from the prx2 prx25 double and prx2 prx25 prx71 triple mutant plants presented lower germination than wild-type plants
PSAD1AT4G02770enhance photosystem 32519347 Arabidopsis thaliana Genetic evidence psad1 Col-0 T-DNA recessive Loss of function decreases seed longevity.
RBOHDAT5G47910decrease ROS 32519347 Arabidopsis thaliana Genetic evidence rbohd Col-0 T-DNA recessive Seeds of rbohd, rbohe and rbohf mutant plants exhibited increased longevity and the double mutant, rbohd,f has even more seed longevity
RBOHEAT1G19230decrease ROS 32519347 Arabidopsis thaliana Genetic evidence rbohe Col-0 T-DNA recessive Seeds of rbohd, rbohe and rbohf mutant plants exhibited increased longevity and the double mutant, rbohd,f has even more seed longevity
RBOHFAT1G64060decrease ROS 32519347 Arabidopsis thaliana Genetic evidence rbohf Col-0 T-DNA recessive Seeds of rbohd, rbohe and rbohf mutant plants exhibited increased longevity and the double mutant, rbohd,f has even more seed longevity
RGA1AT2G01570decrease Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence gai-t6 rga-t2 rgl1-1 Col-0 T-DNA recessive GA3-treated plants and the quintuple DELLA mutant, which shows constitutive activation of the GA signaling pathway, produced seeds that are more resistant to accelerated aging, as compared with their respective controls.
RGA2AT1G14920decrease Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence gai-t6 rga-t2 rgl1-1 Col-0 T-DNA recessive GA3-treated plants and the quintuple DELLA mutant, which shows constitutive activation of the GA signaling pathway, produced seeds that are more resistant to accelerated aging, as compared with their respective controls.
RGL1AT1G66350decrease Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence gai-t6 rga-t2 rgl1-1 Col-0 T-DNA recessive GA3-treated plants and the quintuple DELLA mutant, which shows constitutive activation of the GA signaling pathway, produced seeds that are more resistant to accelerated aging, as compared with their respective controls.
RGL2AT3G03450decrease Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence gai-t6 rga-t2 rgl1-1 Col-0 T-DNA recessive GA3-treated plants and the quintuple DELLA mutant, which shows constitutive activation of the GA signaling pathway, produced seeds that are more resistant to accelerated aging, as compared with their respective controls.
RGL3AT5G17490decrease Hormone, GA 24335333 Arabidopsis thaliana Genetic evidence gai-t6 rga-t2 rgl1-1 Col-0 T-DNA recessive GA3-treated plants and the quintuple DELLA mutant, which shows constitutive activation of the GA signaling pathway, produced seeds that are more resistant to accelerated aging, as compared with their respective controls.
ROF1AT3G25230enhance Protein isomerization 22268595 Arabidopsis thaliana Genetic evidence rof1 rof2 Col-0 T-DNA recessive ROTAMASE FKBP 1, ROF1. Only the double loss-of-function mutant rof1 rof2 was more sensitive than wild-type in the controlled deterioration test for seed longevity, while single rof1 or rof2 mutants and lines over-expressing ROF2 exhibited similar germination to wild-type after accelerated aging of seeds.
ROF2AT5G48570 enhance Protein isomerization 22268595 Arabidopsis thaliana Genetic evidence rof1 rof2 Col-0 T-DNA recessive ROTAMASE FKBP 2, ROF2. Only the double loss-of-function mutant rof1 rof2 was more sensitive than wild-type in the controlled deterioration test for seed longevity, while single rof1 or rof2 mutants and lines over-expressing ROF2 exhibited similar germination to wild-type after accelerated aging of seeds.
RSL1AT2G26130enhance Protein degradtion 24388521 Arabidopsis thaliana Genetic evidence rsl1 Col-0 T-DNA recessive RING FINGER OF SEED LONGEVITY 1, RSL1.Encodes a RING-type zinc finger ubiquitin ligase involved in seed longevity.Gain of function (35S promoter) increases, and loss of function decreases, seed longevity.
SEPAT5G15800decrease TF 32519347 Arabidopsis thaliana Genetic evidence sep Col-0 T-DNA recessive Loss of function increases seed longevity.
SKIP31 AT5G45360enhance 37462265 Arabidopsis thaliana Genetic evidence skip31 Col-0 T-DNA recessive skip31 T-DNA insertion mutants and RNAi lines show a defect in seed maturation and germination vigor and/or viability, while seed-specific OE lines show improved seed vigor in Arabidopsis
SOG1AT1G25580decrease DNA repair 35858436 Arabidopsis thaliana Genetic evidence sog1 Col-0 EMS recessive After accelerated aging,sog1mutant seed exhibited higher levelsof germination than wild-type controls.
SPCH1AT5G53210enhance TF 32519347 Arabidopsis thaliana Genetic evidence spch1 Col-0 T-DNA recessive Loss of function decreases seed longevity.
SSLEAAT3G17520enhance LEA 32519347 Arabidopsis thaliana Genetic evidence sslea Col-0 T-DNA recessive Loss of function decreases seed longevity.
SSTPRAT4G02750enhance tetratricopeptide repeat 32519347 Arabidopsis thaliana Genetic evidence sstpr Col-0 T-DNA recessive Loss of function decreases seed longevity.
TAP46AT5G53000 enhance PP2A 25399018 Arabidopsis thaliana Genetic evidence TAP46OE Col-0 transgene dominance TAP46 overexpression also enhanced seed size and viability under accelerated ageing conditions.
TIP3;1AT1G73190enhance 26019256 Arabidopsis thaliana Genetic evidence tip3;1 tip3;2 Col-0 T-DNA recessive The tip3;1/tip3;2 double mutant was affected in seed longevity and accumulated high levels of hydrogen peroxide compared with the wild type, suggesting that TIP3s function in seed longevity.
TIP3;2AT1G17810enhance 26019256 Arabidopsis thaliana Genetic evidence tip3;1 tip3;2 Col-0 T-DNA recessive The tip3;1/tip3;2 double mutant was affected in seed longevity and accumulated high levels of hydrogen peroxide compared with the wild type, suggesting that TIP3s function in seed longevity.
TT1AT1G34790enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt1-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT10AT5G48100enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt10-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT3AT5G42800enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt3-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT5AT3G55120enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt5-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT7AT5G07990enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt7-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT8AT4G09820enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt8-1 Enkheim (En) EMS recessive BHLH42/TT8. Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
TT9AT3G28430enhance testa pigmentation 10677433 Arabidopsis thaliana Genetic evidence tt9-1 Ler EMS recessive Testa mutants generally showed a reduced germination capacity and a higher rate of seedling abnormalities than their WTs
VTE1AT4G32770enhance vitamin E 15155886 Arabidopsis thaliana Genetic evidence vte1-1 Col-0 EMS recessive Mutants in vitamin E synthesis genes (vte1 and vte2) showed decreased seed longevity
VTE2AT2G18950enhance vitamin E 15155886 Arabidopsis thaliana Genetic evidence vte2-1 Col-0 EMS recessive Mutants in vitamin E synthesis genes (vte1 and vte2) showed decreased seed longevity
WHY1AT1G14410enhance ROS 37351567 Arabidopsis thaliana Genetic evidence why1why3 Col-0 T-DNA recessive Loss of WHY1 and WHY3 functions decreases the ability of Arabidopsis seeds to resist the adverse effects of seed aging.
WHY3AT2G02740enhance ROS 37351567 Arabidopsis thaliana Genetic evidence why1why3 Col-0 T-DNA recessive Loss of WHY1 and WHY3 functions decreases the ability of Arabidopsis seeds to resist the adverse effects of seed aging.
XRCC2AT5G64520enhance DNA repair 35858436 Arabidopsis thaliana Genetic evidence xrcc2-1 Col-0 T-DNA recessive After accelerated aging, mutant seed exhibited lower levelsof germination than wild-type controls.
βVPEAT1G62710enhance marker 30782971 Arabidopsis thaliana Genetic evidence βvpe Col-0 T-DNA recessive The mutant seeds did not show statistical differences from the wild type, although both β-vpe and the quadruple vpe mutant were slightly more sensitive to the ageing treatment
AaDOG1KFK28541Aa_G419960unclear 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT5G45830
AaGA20ox2KFK26790Aa_G598100unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT5G51810
AaGA2ox1KFK42227Aa_G470650unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT1G78440
AaGA2ox2KFK44827Aa_G655020unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT1G30040
AaGA2ox3KFK36353Aa_G291640unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT2G34555
AaGA2ox6KFK42605Aa_G6340unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT1G02400
AaGA2ox8KFK28698Aa_G37650unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT4G21200
AaPEP1JX310558Aa_G579940enhance Flowering 30712274 Arabis alpina Genetic evidence pep1-1 Perpetual flowering accessions and pep1 mutants have low seed longevity. Gene ID of A. thaliana Ortholog is AT5G10140
AaRGL2KFK38060Aa_G47610unclear Hormone GA 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT3G03450
AaSLP2KFK28394Aa_G180420unclear 30712274 Arabis alpina Molecular evidence Gene ID of A. thaliana Ortholog is AT4G34980
CaABI3.1XM_016721996.2CAN.G771.55 unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum B3 domain-containing transcription factor ABI3 (LOC107875324)
CaABI3.2XM_047414275.1CAN.G771.56unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum B3 domain-containing transcription factor ABI3 (LOC107875325)
CaABI5XM_016701108.2CAN.G397.17unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence https://bioinformati Capsicum annuum protein ABSCISIC ACID-INSENSITIVE 5 (LOC107856113)
CaASPG1XM_016700454.2CAN.G587.80unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum protein ASPARTIC PROTEASE IN GUARD CELL 1 (LOC107855434)
CaFUS3XM_016706302.2CAN.G473.153unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum B3 domain-containing transcription factor FUS3 (LOC107860813)
CaGOLS2NM_001324776.1CAN.G358.49unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum galactinol synthase 2 (LOC107859925)
CaHB25XM_016705161.2CAN.G358.72unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum zinc-finger homeodomain protein 2 (LOC107859980)
CaLEA14XM_016682673.2CAN.G78.132unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum desiccation protectant protein Lea14 homolog (LOC107839261)
CaLEC1XM_016694818.2CAN.G1156.20unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum nuclear transcription factor Y subunit B-6 (LOC107850352)
CaOGG1XM_047402030.1CAN.G1391.3unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum N-glycosylase/DNA lyase OGG1 (LOC107854385)
CaPIMT1XM_016708244.2CAN.G126.92unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum protein-L-isoaspartate O-methyltransferase 1 (LOC107862612)
CaSnRK2.6XM_016705648.2CAN.G836.53unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum serine/threonine-protein kinase SRK2I (LOC107860330)
CaVTE1XM_016682501.2CAN.G21.50unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum probable tocopherol cyclase, chloroplastic (LOC107839135)
CaVTE2XM_016694630.2CAN.G33.20unclear Seed coat lignification 34796959 Capsicum annuum Molecular evidence Capsicum annuum homogentisate phytyltransferase 1, chloroplastic (LOC107850218)
CaGolS1KU189226enhance ROS 27725707 Chickpea (Cicer arietinum) Genetic evidence CaGolS1OE transgene dominance Seed-specific overexpression of CaGolS1 and CaGolS2 in Arabidopsis results improved seed vigor and longevity through limiting the age induced excess ROS and consequent lipid peroxidation.
CaGolS2KU189226enhance ROS 27725707 Chickpea (Cicer arietinum) Genetic evidence CaGolS2OE transgene dominance Seed-specific overexpression of CaGolS1 and CaGolS2 in Arabidopsis results improved seed vigor and longevity through limiting the age induced excess ROS and consequent lipid peroxidation.
CaPIMT1GQ421817enhance Protein repair 23284083 Chickpea (Cicer arietinum) Genetic evidence CaPIMT1-OE Col-0 transgene dominance Seed-Specific Overexpression of CaPIMT1 and CaPIMT2 Genes in Arabidopsis Enhances Seed Vigor and Longevity
CaPIMT2JQ690076enhance Protein repair 23284083 Chickpea (Cicer arietinum) Genetic evidence CaPIMT2-OE Col-0 transgene dominance Seed-Specific Overexpression of CaPIMT1 and CaPIMT2 Genes in Arabidopsis Enhances Seed Vigor and Longevity
UpGAPDHMK046694.1decrease Hormone NO 34244712 Elm (Ulmus pumila) Genetic evidence oxUpGAPDH transgene dominance Seeds of oxUpGAPDH lines showed cell death and lost seed vigor rapidly during controlled deterioration treatment-triggered seed aging
NADP-MEAK248526.1 enhance 29744896 Hordeum vulgare transcriptome and pr nadp-me1 Both the NADP-ME MLOC_35785.1 and the UDP-glycosyltransferase MLOC_11661.1 were able to rescue the nadp-me1 seed longevity phenotype.
ZmAGA1XM_008667421.4decrease Raffinose family oligosaccharides 34553917 Maize (Zea mays) Genetic evidence ZmAGA1-OE Col-0 transgene dominance Overexpressing ZmAGA1 in Arabidopsis decreased seed aging tolerance
ZmDREB2ANM_001112406.2GRMZM2G006745enhance 32662115 Maize (Zea mays) Genetic evidence zmdreb2a mutator (Mu)-inserte recessive The zmdreb2a seeds, with decreased expression of RAFFINOSE SYNTHASE (ZmRAFS) and less raffinose in their embryo, exhibit decreased seed aging tolerance, than the NS controls.
ZmLPAEF586878enhance ROS 36614175 Maize (Zea mays) Genetic evidence lpa1-1 Transposon recessive LPA1 gene encodes a multidrug-associated protein (MRP) named ZmMRP4. lpa1-1 seeds aged faster as compared to wildtype
ZmMCCαNM_001371674.1GRMZM2G019926enhance protein repair 36999611 maize (Zea mays) Genetic evidence ZmMCCαOE transgene dominance 3-METHYLCROTONYL COA CARBOXYLASE α-subunit (MCCα). Knockdown of ZmMCCα decreased maize seed aging tolerance.
ZmPIMT2XM_008668898GRMZm2G100315enhance protein repair 36999611 maize (Zea mays) Genetic evidence ZmPIMT2 OE transgene dominance overexpression of ZmPIMT2 decreased the accumulation of isoAsp of ZmMCCα protein in seed embryos that underwent accelerated aging treatment.ZmPIMT2 binds ZmMCCα in mitochondria, repairs isoAsp damage, and positively affects maize seed vigor
AGAL2At5g08370enhance 26410298 Medicago truncatula Cross-species networ aga12 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
CAF-1At2g32070enhance 26410298 Medicago truncatula Cross-species networ caf-1 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
CYP81D3At4g37340enhance 26410298 Medicago truncatula Cross-species networ cyp81d3 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
MtABI3XM_039828061.1Medtr7g059330enhance 23929721 Medicago truncatula Network Mt-abi3 Tnt1 insertion recessive ABSCISIC ACID-INSENSITIVE3 (MtABI3)
MtABI4XM_003616618.3Medtr5g082950enhance 23929721 Medicago truncatula Network ABSCISIC ACID-INSENSITIVE3 (MtABI4)
MtABI5Medtr7g104480enhance ABA 27956585 Medicago truncatula Genetic evidence Mt-abi5 bZIP transcription factor ABSCISIC ACID INSENSITIVE5 (ABI5) in Medicago truncatula
MtHSFA9XM_024782179.2Medtr4g126070enhance Hormone ABA 32683703 Medicago truncatula Genetic evidence Mthsfa9 recessive Decreased germination of mature seeds after accelerated aging compared with WT seeds.
MtMSRA2 MTR_135s0002 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRA4.1L MTR_5g092680 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRA4.1S MTR_5g092680 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRA4.2 MTR_3g051460 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRA5 MTR_8g076060 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRB2 MTR_4g092800 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRB5.1 MTR_2g020950unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRB5.2 MTR_2g020930 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtMSRB5.3 MTR_2g020900 unclear Protein repair 23401556 Medicago truncatula Enzymatic capacity Medicago truncatula methionine sulfoxide reductase (MSR). MSR enzymatic capacity decreased as seed ageing.
MtSNF4bAY247270enhance 17488238 Medicago truncatula Genetic evidence RNAi MtSNF4b RNAi recessive Silencing of MtSNF4b using a RNA interference (RNAi) approach resulted in a phenotype with reduced seed longevity
NFLX1At1g10170enhance 26410298 Medicago truncatula Cross-species networ nflx1 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
NOT4At3g45630enhance 26410298 Medicago truncatula Cross-species networ not4 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
PPC6-1At3g02750enhance 26410298 Medicago truncatula Cross-species networ ppc6-1 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
SIP2At3g57520enhance 26410298 Medicago truncatula Cross-species networ sip2 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
WRKY33At2g38470enhance WRKY TF 26410298 Medicago truncatula Cross-species networ wrky33 Col-0 T-DNA recessive Loss-of-function mutant displays decreased longevity
VrRH1 AF156667 unclear RNA helicase 11785937 Mung bean (Vigna radiata) VrRH1 (Vigna radiata RNA helicase 1)The amount of these mRNAs reached a maximum in 24 h imbibed seeds after the treatment. The accumulation of VrRH transcripts was shown to lead to the appearance of 25S and 18S rRNAs in the imbibed aging mung bean seeds. The results suggest that VrRH1 may play a role in the viability of mung bean seeds.
OcPIMT1-1MZ061932enhance Protein repair 35686643 Oryza coarctata Genetic evidence OcPIMT1-1 RNAi RNAi recessive Suppression of PIMT reduces, and its overexpression increases, seed desiccation tolerance and seed longevity in O. sativa.
OcPIMT2-1MZ061933enhance Protein repair 35686643 Oryza coarctata Genetic evidence OcPIMT2-1 RNAi RNAi recessive Suppression of PIMT reduces, and its overexpression increases, seed desiccation tolerance and seed longevity in O. sativa.
OcPIMT2-2MZ061934enhance Protein repair 35686643 Oryza coarctata Genetic evidence OcPIMT2-2 RNAi RNAi recessive Suppression of PIMT reduces, and its overexpression increases, seed desiccation tolerance and seed longevity in O. sativa.
PsABI5PsCam017634enhance ABA 27956585 Pea (Pisum sativum) Genetic evidence bZIP transcription factor ABSCISIC ACID INSENSITIVE5 (ABI5) in Pisum sativum.
PSLAG1XP_002322262unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Acetolactate synthase
PSLAG10XP_002329233unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Hydroxyacylglutathione hydrolase
PSLAG11ABK93990unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Inorganic pyrophosphatase
PSLAG12XP_002329233unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Hydroxyacyiglutathione hydrolase
PSLAG13XP_002314019unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Ribonucleoprotein
PSLAG14ABK96373unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Ribonucleoprotein
PSLAG15XP_002322981unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Probable pyridoxal biosynthesis protein PDX1
PSLAG16XP_002326261unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase
PSLAG17XP_002311517unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Cytosolic phosphoglucomutase
PSLAG18XP_002311090unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Phosphoglucomutase
PSLAG19XP_002322420unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Enolase
PSLAG2XP_002321728unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Glutamate-1-semialdehyde 2,1-aminomutase
PSLAG20BAA33801unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Cytosolic phosphoglycerate kinase 1
PSLAG21XP_002315067unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Phosphoglycerate kinase
PSLAG22XP_002311168unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Triosephosphate isomerase
PSLAG23XP_002314179unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Triosephosphate isomerase
PSLAG24XP_002314631unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Pyruvate dehydrogenase
PSLAG25XP_002305090unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Magnesium-chelatase subunit chll
PSLAG26XP_002309064unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Putative NAD-dependent
PSLAG27ABK96553unclear Energy 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Peptidyi-prolyl cis-trans isomer
PSLAG28XP_002301171unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Polyadenylate-binding protein
PSLAG29XP_002306784unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Nucleolar protein nop56
PSLAG3XP_002301683unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Glutamine synthetase
PSLAG30XP_002317118unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence NSFL1 cofactor p47
PSLAG31XP_002319515unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence 26S proteasome AAA-ATPase
PSLAG32XP_002318902unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Proteasome subunit alpha type
PSLAG33XP_002308263unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Proteasome subunit alpha type
PSLAG34ADG86642unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Proteasome subunit beta type
PSLAG35AAN60260unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Aspartic proteinase
PSLAG36XP_002328218unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Chaperonin containing t-complexprotein 1
PSLAG37ABK93392unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Protein disulfide isomerase
PSLAG38XP_002326137unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Groes chaperonin
PSLAG39XP_002324138unclear Protein synthesis and destination( 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence 20 kDa chaperonin family protein
PSLAG4XP_002311011unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Argininosuccinate synthase
PSLAG42XP_002329509unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Glutelin type-A 3
PSLAG43XP_002306851unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence 11S globulin seed storage protein 2
PSLAG44XP_002307645unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Legumin family protein
PSLAG45XP_002313331unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Nutrient reservoir
PSLAG46XP_002336547unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Glutelin type-A 3
PSLAG47XP_002317577unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence 2S albumin family protein
PSLAG48XP_002336547unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Glutelin type-A 3
PSLAG49XP_006370926unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Legumin family protein
PSLAG5XP_002308219unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Probable pyridoxal biosynthesis protein PDX1
PSLAG50XP_002329472unclear Storage protein 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Hypothetical protein
PSLAG52XP_002317682unclear Signal transduction 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Serine/threonine-protein kinase
PSLAG53XP_002312740unclear Cell growth and structure 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Dienelactone hydrolase family protein
PSLAG54XP_002311776unclear Cell growth and structure 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence F5O8.30 protein
PSLAG55XP_002301942unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Phi class glutathione transferase GSTF2
PSLAG56XP_002313445unclear Hormore CK 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Zeamatin
PSLAG57XP_002299179unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Cysteine proteinase inhibitor
PSLAG58CAI43948unclear ROS 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Catalase
PSLAG59XP_002319637unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Aldo/keto reductase
PSLAG6XP 002325923unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence ATP phosphoribosyltransferase
PSLAG60XP_002330137unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Late embryogenesis abundant
PSLAG61XP_002328518unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Late embryogenesis abundant
PSLAG62XP_002326522unclear Hormone ABA 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Abscisic acid receptor PYR1
PSLAG63XP_002331340unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Heat shock factor binding protein
PSLAG64XP_002324004unclear Cell defense and rescue 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Universal stress family protein
PSLAG7XP002312082unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Thymidine diphospho-glucose-4-6-dehydratase
PSLAG8XP_006388670unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence GDSL esterase/ipase
PSLAG9XP_002298803unclear Metabolism 26172265 Poplar (Populus × Canadensis Moench) Proteomic evidence Inorganic pyrophosphatase
Os4BGlu14XM_015778859decrease metabolism 32833149 Rice (Oryza sativa) Genetic evidence Os4BGlu14-OE Os4BGlu14, a monolignol β-glucosidase, plays a negative role in seed longevity by affecting primary metabolism during seed development and aging.
OsAGO1Os02g0831600unclear miRNA 30791202 Rice (Oryza sativa) Genetic evidence Rice Argonaute1 (AGO1)
OsALDH7XM_015756349.1LOC_Os09g26880enhance detoxification 19052152 Rice (Oryza sativa) Genetic evidence osaldh7 T-DNA recessive The osaldh7 mutant seeds were more sensitive to our accelerated aging treatment and accumulated more malondialdehyde than the wild type.
Osa-miR164cMIMAT0001033decrease miRNA 33281848;30791202 Rice (Oryza sativa) Genetic evidence OE164c transgene dominance Ovexpression of Osa-miR164c decreases seed longevity. https://mirbase.org/browse/results/?organism=osa
Osa-miR168a MIMAT0001045enhance miRNA 30791202 Rice (Oryza sativa) Genetic evidence MIM168a Osa-miR164c overexpression in OE164c transgenic seeds and osa-miR168a silencing in MIM168a transgenic seeds of the rice cultivar Kasalath led to lower germination rates, whereas osa-miR164c silencing in MIM164c and osa-miR168a overexpression in OE168a resulted in higher seed germination rates compared with wild-type seeds
OsAOX1aAB004864enhance ROS 37375909 Rice (Oryza sativa) Genetic evidence OsAOX1a-RNAi RNAi recessive Low AOX1a Impaired Seed Development and Storability
OsBESLOC_Os02g03690unclear 35217598 Rice (Oryza sativa) Molecular evidence beta-amylase, putative, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsbZIP23LOC_Os02g52780enhance ROS,detoxification,ABA 35217598 Rice (Oryza sativa) Genetic evidence 35S::bZIP23 transgene dominance Overexpression of bZIP23 enhanced seed vigor, whereas its gene knockout reduced seed vigor,
OsbZIP66LOC_Os05g41070unclear bZIP TF 35217598 Rice (Oryza sativa) Molecular evidence bZIP transcription factor, putative, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsCPuORF5LOC_Os12g37410unclear 35217598 Rice (Oryza sativa) Molecular evidence CPuORF5 - conserved peptide uORF-containing transcript, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsDREB2ALOC_Os01g07120unclear 35217598 Rice (Oryza sativa) Molecular evidence AP2 domain containing protein.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsDREB2CLOC_Os08g45110unclear 35217598 Rice (Oryza sativa) Molecular evidence AP2 domain containing protein, expressed
OsEIN3LOC_Os03g20780unclear Ethylene 35217598 Rice (Oryza sativa) Molecular evidence ethylene-insensitive 3, putative, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsEPSPSXM_015787560.1LOC_Os06g04280enhance ROS 34203092 Rice (Oryza sativa) Genetic evidence 5-enolpyruvylshikimate 3-phosphate synthase (EPSPs)
OsERF54LOC_Os01g46870unclear ERF TF 35217598 Rice (Oryza sativa) Molecular evidence AP2 domain containing protein.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsERF76LOC_Os04g57340unclear ERF TF 35217598 Rice (Oryza sativa) Molecular evidence AP2 domain containing protein, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsERN1LOC_Os07g10410unclear 35217598 Rice (Oryza sativa) Molecular evidence AP2 domain containing protein, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsGID1NM_001420504.1LOC_Os05g33730unclear Hormone GA 35651763 Rice (Oryza sativa) Transcriptome Specific long-lived mRNAs in rice, including gibberellin receptor gene GID1, which may be associated with seed longevity.
OsGLYI3XM_015773698.2LOC_Os03g16940enhance ROS 35569169 Rice (Oryza sativa) Genetic evidence OsGLYI3-cr CRISP recessive The accelerated aging (AA) treatment results indicated significant roles of OsGLYI3 in seed longevity and vigor, as the seeds of the transgenic lines with overexpressed and knocked-out OsGLYI3 exhibited higher and lower germination, respectively.
OsGT2LOC_Os02g43300unclear 35217598 Rice (Oryza sativa) Molecular evidence expressed protein.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsHGGTAY222862enhance ROS 26810451 Rice (Oryza sativa) Genetic evidence OsHGGT:RNAi RNAi recessive Deficiency of tocopherols and tocotrienols led to accelerated aging in OsHGGT:RNAi seeds
OsHSFA2CLOC_Os10g28340unclear 35217598 Rice (Oryza sativa) Molecular evidence heat stress transcription factor, putative, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsHSFB2CLOC_Os09g35790unclear 35217598 Rice (Oryza sativa) Molecular evidence HSF-type DNA-binding domain containing protein, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsHSFC1BLOC_Os01g53220unclear 35217598 Rice (Oryza sativa) Molecular evidence HSF-type DNA-binding domain containing protein. Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsHSP18.2 NM_001406238LOC_Os01g08860enhance ROS 26442027 Rice (Oryza sativa) Genetic evidence OsHSP18.2 OE transgene dominance OsHSP18.2 has ability to improve seed vigor and longevity by reducing deleterious ROS accumulation in seeds
OsLOX10 XM_015759992decrease 36867321 Rice (Oryza sativa) Genetic evidence OsLOX10-Cr CRISP recessive CRISPR/Cas9 knockout of OsLOX10 increased seed longevity compared with the wild-type and OsLOX10 overexpression lines in response to artificial aging
OsLOX2Os03g0738600decrease Lipid Oxidation 24792034 Rice (Oryza sativa) Genetic evidence OsLOX2 RNAi RNAi recessive RNA interference (RNAi) of OsLOX2 caused delayed germination and enhanced seed longevity.
OsLOX3XM_052294053Os03g0700400decrease lipid oxidation 26641666 Rice (Oryza sativa) Genetic evidence TA-lox3 TALENs recessive LOX3 knockout mutants show improved seed storability
OsLOX3NM_001402220.1LOC_Os03g49260decrease Lipid Oxidation 25545811 Rice (Oryza sativa) Genetic evidence OsLOX3 RNAi RNAi recessive The suppression of LOX3 expression in rice endosperm increased grain storability
OsLTPL36LOC_Os03g25350enhance lipid transport 26398804 Rice (Oryza sativa) Genetic evidence OsLTPL36 RNAi RNAi recessive impeded seed germination and puny seedling were also observed in the OsLTPL36 RNAi lines
OsMSRB5LOC_Os03g24600enhance Protein repair 35909309 Rice (Oryza sativa) Genetic evidence OsMSRB5 RNAi RNAi recessive OsMSRB5 preserves seed vigor and longevity by modulating ROS homeostasis in seeds.
OsNAC78LOC_Os08g44820unclear NAC TF 35217598 Rice (Oryza sativa) Molecular evidence no apical meristem protein, putative, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsPIMT1XM_026027566.1LOC_Os08g44280enhance Protein repair 26987457 Rice (Oryza sativa) Genetic evidence 35S:OsPIMT1 transgene dominance PIMT repairs antioxidative enzymes and proteins which restrict ROS accumulation, lipid peroxidation, etc. in seed, particularly during aging, thus contributing to seed vigor and longevity.
OsPIMT1Os08g055700enhance Protein repair 26438231 Rice (Oryza sativa) Genetic evidence The germination percentage of transgenic seeds overexpressing OsPIMT1 increased 9�C15 % compared to the WT seeds after 21-day of artificial aging, whereas seeds from the OsPIMT1 RNAi lines overaccumulated isoAsp in embryos and experienced rapid loss of seed germinability.
OsPIMT2XM_015778385LOC_Os04g40540enhance Protein repair 26987457 Rice (Oryza sativa) Genetic evidence 35S:OsPIMT2 transgene dominance PIMT repairs antioxidative enzymes and proteins which restrict ROS accumulation, lipid peroxidation, etc. in seed, particularly during aging, thus contributing to seed vigor and longevity.
OsPM27XM_015761726.2LOC_Os11g44940unclear miRNA 30791202 Rice (Oryza sativa) Genetic evidence Seed maturation protein gene
OsPSK5 NM_001423322.1LOC_Os12g05260unclear miRNA 30791202 Rice (Oryza sativa) Genetic evidence phytosulfokines precursor gene
OsPTR2NM_001418486LOC_Os03g48180unclear miRNA 30791202 Rice (Oryza sativa) Genetic evidence peptide transporter gene
OsRAV1LOC_Os01g49830unclear 35217598 Rice (Oryza sativa) Molecular evidence B3 DNA binding domain containing protein.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsSLAG1LOC_Os01g71930unclear 31180503 Rice (Oryza sativa) Molecular evidence Glycosyl hydrolases family 17 protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG10LOC_Os04g01140 unclear 31180503 Rice (Oryza sativa) Molecular evidence Cytochrome P450 93A2. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG11LOC_Os04g01160unclear 31180503 Rice (Oryza sativa) Molecular evidence Zinc finger family protein.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG12LOC_Os04g01230unclear 31180503 Rice (Oryza sativa) Molecular evidence Phosphoglycerate mutase. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG13LOC_Os04g01280unclear 31180503 Rice (Oryza sativa) Molecular evidence Glycosyltransferase family 43 protein.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG14LOC_Os04g01290unclear 31180503 Rice (Oryza sativa) Molecular evidence Proteasome subunit. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG15LOC_Os04g01300unclear 31180503 Rice (Oryza sativa) Molecular evidence OsRhmbd10. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG16LOC_Os09g37250unclear 31180503 Rice (Oryza sativa) Molecular evidence High mobility group.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG17LOC_Os09g37280unclear 31180503 Rice (Oryza sativa) Molecular evidence Peroxisomal multifunctional enzyme type 2. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG18LOC_Os09g37300unclear 31180503 Rice (Oryza sativa) Molecular evidence Transporter, monovalent cation:proton antiporter-2 family. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG19LOC_Os11g01439unclear 31180503 Rice (Oryza sativa) Molecular evidence Chloroplast unusual positioning protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG2LOC_Os01g71960unclear 31180503 Rice (Oryza sativa) Molecular evidence Endonuclease.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG20LOC_Os11g01550unclear 31180503 Rice (Oryza sativa) Molecular evidence DUF260 domain containing protein.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG21LOC_Os11g01570unclear 31180503 Rice (Oryza sativa) Molecular evidence PMR5.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG22LOC_Os11g01590unclear 31180503 Rice (Oryza sativa) Molecular evidence Nodulin. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG23LOC_Os11g01600unclear 31180503 Rice (Oryza sativa) Molecular evidence Macrophage migration inhibitory factor. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG24LOC_Os03g06890unclear 31180503 Rice (Oryza sativa) Molecular evidence DUF593 domain containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG25LOC_Os03g06900unclear 31180503 Rice (Oryza sativa) Molecular evidence DNA topoisomerase 3 protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG26LOC_Os03g06930unclear 31180503 Rice (Oryza sativa) Molecular evidence Homeodomain protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG27LOC_Os03g06940unclear 31180503 Rice (Oryza sativa) Molecular evidence Beta-galactosidase. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG28LOC_Os03g09150unclear 31180503 Rice (Oryza sativa) Molecular evidence Pumilio-family RNA binding repeat domain containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG29LOC_Os03g09210unclear 31180503 Rice (Oryza sativa) Molecular evidence NADH dehydrogenase 1 alpha subcomplex subunit 13. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG3LOC_Os01g71970unclear 31180503 Rice (Oryza sativa) Molecular evidence GRAS family transcription factor containing protein.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG30LOC_Os03g09220unclear 31180503 Rice (Oryza sativa) Molecular evidence Stage II sporulation protein E. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG31LOC_Os03g03790unclear 31180503 Rice (Oryza sativa) Molecular evidence AMP-binding domain containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG32LOC_Os03g03820unclear 31180503 Rice (Oryza sativa) Molecular evidence Adenylate kinase. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG33LOC_Os03g03850unclear 31180503 Rice (Oryza sativa) Molecular evidence GATA zinc finger domain containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG34LOC_Os03g03870unclear 31180503 Rice (Oryza sativa) Molecular evidence DNA-binding bromodomain-containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG35LOC_Os11g11500unclear 31180503 Rice (Oryza sativa) Molecular evidence Serpin domain containing protein. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG36LOC_Os11g11580unclear 31180503 Rice (Oryza sativa) Molecular evidence NB-ARC domain containing protein.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG4LOC_Os01g71980unclear 31180503 Rice (Oryza sativa) Molecular evidence rho-GTPase-activating protein-like.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG5LOC_Os03g51030unclear 31180503 Rice (Oryza sativa) Molecular evidence Phytochrome A.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG6LOC_Os03g51050unclear 31180503 Rice (Oryza sativa) Molecular evidence Peptide transporter PTR2. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG7LOC_Os03g51080unclear 31180503 Rice (Oryza sativa) Molecular evidence Glutamate decarboxylase. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG8LOC_Os03g51110unclear 31180503 Rice (Oryza sativa) Molecular evidence MYB family transcription factor.Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSLAG9LOC_Os04g01130unclear 31180503 Rice (Oryza sativa) Molecular evidence Chromatin modification-related protein EAF3.Chromatin modification-related protein EAF3. Candidate genes associated with seed longevity traits of 299 Indica rice accessions.
OsSPL15LOC_Os08g40260unclear 35217598 Rice (Oryza sativa) Molecular evidence OsSPL15 - SBP-box gene family member, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsSPL9LOC_Os05g33810unclear SPL TF 35217598 Rice (Oryza sativa) Molecular evidence OsSPL9 - SBP-box gene family member, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsTCX2LOC_Os07g07974unclear 35217598 Rice (Oryza sativa) Molecular evidence tesmin/TSO1-like CXC domain containing protein, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsWRKY13LOC_Os01g54600unclear WRKY TF 35217598 Rice (Oryza sativa) Molecular evidence WRKY13.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
OsWRKY51LOC_Os04g21950unclear WRKYTF 35217598 Rice (Oryza sativa) Molecular evidence WRKY51, expressed.Transcriptional factor possesses over-representative targets among the genes differentially expressed during Kasalath and Jigeng88 seed ageing.
SNAT1AK059369enhance melatonin 31952365 Rice (Oryza sativa) Genetic evidence snat1 RNAi recessive Seed-aging testing revealed that snat1 was the most severely deteriorated, followed by snat1+2 and snat2, suggesting that melatonin is positively involved in seed longevity.
SNAT2AK068156enhance melatonin 31952365 Rice (Oryza sativa) Genetic evidence snat2 RNAi recessive Seed-aging testing revealed that snat1 was the most severely deteriorated, followed by snat1+2 and snat2, suggesting that melatonin is positively involved in seed longevity.
OsGH3-2NM_001408978.1LOC_Os01g55940decrease Hormone Auxin 33570603 Rice (Oryza sativa) Genetic evidence OsGH3-2 OE transgene dominance Overexpression of OsGH3-2 significantly decreased seed storability, while knockout or knockdown of the gene enhanced seed storability compared with the wild-type.
OsSAUR33XM_015793499.2LOC_Os08g35110enhance Hormone Auxin 33557166 Rice (Oryza sativa) Genetic evidence ossaur33-1 CRISPR recessive Disruption of OsSAUR33 Results in Low Seed Vigor
NnHSP17.5EF100453.1enhance HSP 22009054 Sacred lotus (Nelumbo nucifera Gaertn.) Genetic evidence NnHSP17.5-YFP Col-0 transgene dominance Transgenic Arabidopsis seeds ectopically expressing NnHSP17.5 displayed enhanced seed germination vigor and exhibited increased superoxide dismutase activity after accelerated aging treatment.
NnMT2aEF421200.1enhance ROS 21971996 Sacred lotus (Nelumbo nucifera Gaertn.) Genetic evidence NnMT2a-YFP Col-0 transgene dominance Transgenic Arabidopsis seeds overexpressing NnMT2a and NnMT3 displayed improved resistance to accelerated aging (AA) treatment, indicating their significant roles in seed germination vigor.
NnMT3EF421199.1enhance ROS 21971996 Sacred lotus (Nelumbo nucifera Gaertn.) Genetic evidence NnMT3-YFP Col-0 transgene dominance Transgenic Arabidopsis seeds overexpressing NnMT2a and NnMT3 displayed improved resistance to accelerated aging (AA) treatment, indicating their significant roles in seed germination vigor.
NnPER1XM_010272626.2enhance ROS 27464651 Sacred lotus (Nelumbo nucifera Gaertn.) Genetic evidence NnPER1-OE Col-0 transgene dominance Ectopic expression of NnPER1enhances seed longevity
GmATX1 NM_001251167enhance Copper Chaperone 35631750 Soybean (Glycine max) Genetic evidence GmATX1ox Col-0 transgene dominance Copper Chaperone Protein Gene GmATX1 Promotes Seed Vigor and Seedling Tolerance under Heavy Metal and High Temperature and Humidity Stresses
GmPAL1.1NM_001357056enhance PAL 36501278 Soybean (Glycine max) Genetic evidence GmPAL1ox Col-0 transgene dominance GmPAL1.1 Promotes Seed Vigor under High-Temperature and -Humidity Stress and Enhances Seed Germination under Salt and Drought Stress
GmPLDα1NR_163829.1Glyma.15G008500decrease 30622651 Soybean (Glycine max) Genetic evidence GmPLDα1KD RNAi recessive Phospholipase Dα1.PLDα1-knockdown soybean seeds display higher unsaturated glycerolipid contents and seed vigor in high temperature and humidity environments
BvCRTCAA05161unclear Ca2+ 21432998 Sugarbeet (Beta vulgaris) Proteomic evidence Calreticulin
BvEF2CAB09900unclear Translation 21432998 Sugarbeet (Beta vulgaris) Proteomic evidence Translation elongation factor 2 (EF-2)
BvFRKAAA80675unclear Methodology,biomarker 21432998 Sugarbeet (Beta vulgaris) Proteomic evidence Fructokinase
BvSAMSBAE07179unclear Hormone ACC 21432998 Sugarbeet (Beta vulgaris) Proteomic evidence S-adenosyl-L-methionine synthetase
HaDREB2AY508007enhance DREB TF 19545370 Sunflower (Helianthus annuus) Genetic evidence CaMV35S: HaDREB2 transgene dominance HaDREB2 and HaHSFA9 were conjointly overexpressed in seeds to enhance seed longevity.
HaHSFA9AY099451.1enhance Heat, HSF TF 16998084 Sunflower (Helianthus annuus) Genetic evidence DS10::HaHSFA9 transgene dominance Tobacco (Nicotiana tabacum) seeds over-expressing HaHSFA9 (a heat shock transcription factor isolated from sunflower Helianthus annuus) accumulate elevated levels of heat shock proteins and are more tolerant to CDT
HaIAA27FR669188decrease Hormone Auxin 21115822 Sunflower (Helianthus annuus) Genetic evidence HaHSFA9 transcription factor was reported to interact with the auxin/IAA (Aux/IAA) protein HaIAA27, leading to its repression. Auxin would therefore act downstream of ABI3 to enhance seed longevity by alleviating HaIAA27-mediated HaHSFA9 repression in sunflower
HaHSFA9AY099451enhance HSP 20444218;12228226 Sunflower(Helianthus annuus) Genetic evidence HaHSFA9-SRDX SRDX recessive HaHSFA9-SRDX showed a highly significant reduction of seed longevity