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About
Basic information   
Locus name AT1G15740
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryProtein degradation/modification:protein kinase and phosphatases
Effect for Senescenceunclear
Gene Descriptionleucine-rich repeat family protein
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

SequenceAT1G15740.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_126657
AccessionTaxon
NP_563980 ( AT1G15740 ) Arabidopsis thaliana
NP_683486Arabidopsis thaliana
CMO214CCyanidioschyzon merolae strain 10D
153692Chlamydomonas reinhardtii
171527Chlamydomonas reinhardtii
171534Chlamydomonas reinhardtii
ACO61101Micromonas sp. RCC299
ACO61736Micromonas sp. RCC299
ACO63899Micromonas sp. RCC299
ACO64271Micromonas sp. RCC299
ACO64340Micromonas sp. RCC299
ACO65032Micromonas sp. RCC299
ACO65033Micromonas sp. RCC299
ACO65696Micromonas sp. RCC299
ACO65697Micromonas sp. RCC299
ACO66885Micromonas sp. RCC299
ACO67361Micromonas sp. RCC299
ACO67425Micromonas sp. RCC299
ACO67897Micromonas sp. RCC299
ACO68043Micromonas sp. RCC299
ACO68616Micromonas sp. RCC299
ACO68709Micromonas sp. RCC299
ACO68712Micromonas sp. RCC299
ACO69003Micromonas sp. RCC299
ACO69004Micromonas sp. RCC299
ACO69248Micromonas sp. RCC299
ACO69332Micromonas sp. RCC299
ACO69887Micromonas sp. RCC299
ACO69946Micromonas sp. RCC299
NP_001042644Oryza sativa Japonica Group
NP_001047326Oryza sativa Japonica Group
NP_001047418Oryza sativa Japonica Group
NP_001053240Oryza sativa Japonica Group
NP_001062881Oryza sativa Japonica Group
NP_001067488Oryza sativa Japonica Group
NP_001067491Oryza sativa Japonica Group
NP_001067497Oryza sativa Japonica Group
NP_001067498Oryza sativa Japonica Group
e_gw1.107.152.1Physcomitrella patens subsp. patens
e_gw1.107.163.1Physcomitrella patens subsp. patens
e_gw1.107.32.1Physcomitrella patens subsp. patens
e_gw1.107.43.1Physcomitrella patens subsp. patens
e_gw1.107.50.1Physcomitrella patens subsp. patens
e_gw1.107.61.1Physcomitrella patens subsp. patens
e_gw1.11.37.1Physcomitrella patens subsp. patens
e_gw1.113.68.1Physcomitrella patens subsp. patens
e_gw1.158.79.1Physcomitrella patens subsp. patens
e_gw1.158.81.1Physcomitrella patens subsp. patens
e_gw1.167.75.1Physcomitrella patens subsp. patens
e_gw1.167.77.1Physcomitrella patens subsp. patens
e_gw1.17.48.1Physcomitrella patens subsp. patens
e_gw1.17.54.1Physcomitrella patens subsp. patens
e_gw1.176.36.1Physcomitrella patens subsp. patens
e_gw1.176.9.1Physcomitrella patens subsp. patens
e_gw1.180.95.1Physcomitrella patens subsp. patens
e_gw1.2.64.1Physcomitrella patens subsp. patens
e_gw1.2.73.1Physcomitrella patens subsp. patens
e_gw1.202.8.1Physcomitrella patens subsp. patens
e_gw1.214.15.1Physcomitrella patens subsp. patens
e_gw1.234.32.1Physcomitrella patens subsp. patens
e_gw1.238.1.1Physcomitrella patens subsp. patens
e_gw1.248.49.1Physcomitrella patens subsp. patens
e_gw1.30.98.1Physcomitrella patens subsp. patens
e_gw1.31.139.1Physcomitrella patens subsp. patens
e_gw1.35.78.1Physcomitrella patens subsp. patens
e_gw1.374.20.1Physcomitrella patens subsp. patens
e_gw1.385.18.1Physcomitrella patens subsp. patens
e_gw1.409.27.1Physcomitrella patens subsp. patens
e_gw1.415.11.1Physcomitrella patens subsp. patens
e_gw1.44.51.1Physcomitrella patens subsp. patens
e_gw1.508.19.1Physcomitrella patens subsp. patens
e_gw1.65.52.1Physcomitrella patens subsp. patens
e_gw1.814.5.1Physcomitrella patens subsp. patens
e_gw1.85.24.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_1130079Physcomitrella patens subsp. patens
estExt_Genewise1.C_350021Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1070156Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_1800080Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_300001Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_40159Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_287000004Physcomitrella patens subsp. patens
gw1.107.30.1Physcomitrella patens subsp. patens
gw1.107.35.1Physcomitrella patens subsp. patens
gw1.124.68.1Physcomitrella patens subsp. patens
gw1.132.58.1Physcomitrella patens subsp. patens
gw1.169.28.1Physcomitrella patens subsp. patens
gw1.176.35.1Physcomitrella patens subsp. patens
gw1.2.104.1Physcomitrella patens subsp. patens
gw1.246.11.1Physcomitrella patens subsp. patens
gw1.345.4.1Physcomitrella patens subsp. patens
gw1.39.176.1Physcomitrella patens subsp. patens
gw1.40.93.1Physcomitrella patens subsp. patens
gw1.44.174.1Physcomitrella patens subsp. patens
29841.m002923Ricinus communis
29850.m000272Ricinus communis
29910.m000938Ricinus communis
gw1.12.125.1Thalassiosira pseudonana CCMP1335
XP_002956701Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR231255.4E-2581541No hitNA
SUPERFAMILYSSF520477.1E-43144384No hitNA
PfamPF135160.0161184No hitNA
SMARTSM003670.0161186IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.2186210No hitNA
SMARTSM00367100.0187211IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.5235260IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.3260281No hitNA
SMARTSM00367340.0261284IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367200.0309333IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135164.0E-4357379No hitNA
SMARTSM0036710.0357381IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.4405426No hitNA
SMARTSM0036724.0405429IPR006553Leucine-rich repeat, cysteine-containing subtype
SUPERFAMILYSSF520477.1E-43429564No hitNA
SMARTSM00367300.0430453IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036717.0501526IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367240.0550574IPR006553Leucine-rich repeat, cysteine-containing subtype