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GenBank ID | AF454958 |
Alias | BoCP3 | Organism | Broccoli (Brassica oleracea) | Taxonomic identifier | [NCBI] | Function category | Macromolecule degradation | Effect for Senescence | unclear | Gene Description | The mRNAs encoded by the broccoli cDNAs are expressed in floret tissue during harvest-induced senescence with mRNA accumulating within 6 h of harvest for BoCP1, 12 h of harvest for BoCP4 and within 24 h of harvest for BoCP2 and BoCP3. | Evidence | Molecular evidence:Northern [Ref 1] | References | 1: Coupe SA, Sinclair BK, Watson LM, Heyes JA, Eason JRIdentification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets.J. Exp. Bot. 2003 Mar;54(384):1045-56 | Gene Ontology | | Sequence | AF454958.1 | mRNA | CDS | Protein
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR12411 | 4.7E-240 | 1 | 428 | IPR013128 | Peptidase C1A, papain | SUPERFAMILY | SSF54001 | 2.8E-113 | 41 | 347 | No hit | NA | Pfam | PF08246 | 1.9E-15 | 48 | 104 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | SMART | SM00848 | 8.9E-25 | 48 | 104 | IPR013201 | Proteinase inhibitor I29, cathepsin propeptide | Pfam | PF00112 | 1.0E-85 | 132 | 347 | IPR000668 | Peptidase C1A, papain C-terminal | SMART | SM00645 | 1.7E-126 | 132 | 347 | IPR000668 | Peptidase C1A, papain C-terminal | PRINTS | PR00705 | 8.4E-11 | 150 | 165 | IPR000668 | Peptidase C1A, papain C-terminal | ProSitePatterns | PS00139 | NA | 150 | 161 | IPR000169 | Cysteine peptidase, cysteine active site | ProSitePatterns | PS00639 | NA | 290 | 300 | IPR025660 | Cysteine peptidase, histidine active site | PRINTS | PR00705 | 8.4E-11 | 292 | 302 | IPR000668 | Peptidase C1A, papain C-terminal | PRINTS | PR00705 | 8.4E-11 | 307 | 313 | IPR000668 | Peptidase C1A, papain C-terminal | ProSitePatterns | PS00640 | NA | 307 | 326 | IPR025661 | Cysteine peptidase, asparagine active site | SUPERFAMILY | SSF57277 | 5.5E-12 | 367 | 401 | No hit | NA | SMART | SM00277 | 5.4E-29 | 370 | 427 | IPR000118 | Granulin | Pfam | PF00396 | 2.0E-12 | 381 | 428 | IPR000118 | Granulin |
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