Basic information
Locus name	AT4G13920
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:protein kinase and phosphatases
Effect for Senescence	unclear
Gene Description	disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT4G13920.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G13920.1  miRNA: ath-miR406 miRNA: ath-miR406 mfe: -22.7 kcal/mol  p-value: 0.027466  position:  568  target 5' A              G  A   C 3'             CUGGAUU CGAUGG CA UCU              GACCUAA GUUAUC GU AGA   miRNA  3'         U         A   U 5'
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 Arabidopsis thaliana NP_187187 Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 ( AT4G13920 ) Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08263 9.1E-11 28 75 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 PANTHER PTHR24420 1.9E-185 85 882 No hit NA SMART SM00369 17.0 104 127 IPR003591 Leucine-rich repeat, typical subtype SUPERFAMILY SSF52058 7.8E-53 104 252 No hit NA Pfam PF00560 0.1 106 124 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 6.5 106 128 IPR001611 Leucine-rich repeat PRINTS PR00019 2.3E-5 107 120 No hit NA ProSiteProfiles PS51450 4.7 130 153 IPR001611 Leucine-rich repeat Pfam PF13516 0.9 153 176 No hit NA ProSiteProfiles PS51450 4.8 154 175 IPR001611 Leucine-rich repeat SMART SM00369 310.0 177 201 IPR003591 Leucine-rich repeat, typical subtype Pfam PF13855 6.8E-7 179 237 No hit NA ProSiteProfiles PS51450 5.1 203 225 IPR001611 Leucine-rich repeat SMART SM00369 160.0 225 249 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.2 227 250 IPR001611 Leucine-rich repeat Pfam PF13516 0.0 249 271 No hit NA ProSiteProfiles PS51450 5.5 251 272 IPR001611 Leucine-rich repeat SMART SM00369 23.0 286 310 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 4.8 288 309 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 7.8E-53 289 379 No hit NA ProSiteProfiles PS51450 4.8 312 334 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 5.2E-24 359 519 No hit NA ProSiteProfiles PS51450 5.4 361 382 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.9 410 430 IPR001611 Leucine-rich repeat Pfam PF13855 9.6E-8 432 489 No hit NA ProSiteProfiles PS51450 4.7 432 453 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.1 455 478 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 2.0E-52 505 670 No hit NA ProSiteProfiles PS51450 6.2 546 567 IPR001611 Leucine-rich repeat Pfam PF13855 2.1E-7 570 627 No hit NA ProSiteProfiles PS51450 4.8 593 616 IPR001611 Leucine-rich repeat Pfam PF13855 1.2E-7 716 773 No hit NA SUPERFAMILY SSF52058 2.0E-52 718 827 No hit NA SMART SM00369 210.0 736 759 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.4 738 761 IPR001611 Leucine-rich repeat PRINTS PR00019 2.3E-5 760 773 No hit NA SMART SM00369 5.4 760 784 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 7.6 762 784 IPR001611 Leucine-rich repeat