|
|
| Locus name | AT1G63840 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 finger protein RHA1a (GI:3790554) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT1G63840.1 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT1G63840.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -30.7 kcal/mol
p-value: 0.003675
position: 263
target 5' U U U U U 3'
CUC CUC CUCUCUGUC CUUGUC
GAG GAG GAGGGAUAG GAGUAG
miRNA 3' 5'
target: AT1G63840.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -30.7 kcal/mol
p-value: 0.004877
position: 263
target 5' U U U U U 3'
CUC CUC CUCUCUGUC CUUGUC
GAG GAG GAGGGAUAG GAGUAG
miRNA 3' 5'
target: AT1G63840.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -30.7 kcal/mol
p-value: 0.003765
position: 263
target 5' U U U U U 3'
CUC CUC CUCUCUGUC CUUGUC
GAG GAG GAGGGAUAG GAGUAG
miRNA 3' 5'
target: AT1G63840.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -30.7 kcal/mol
p-value: 0.003758
position: 263
target 5' U U U U U 3'
CUC CUC CUCUCUGUC CUUGUC
GAG GAG GAGGGAUAG GAGUAG
miRNA 3' 5'
target: AT1G63840.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -30.7 kcal/mol
p-value: 0.004915
position: 263
target 5' U U U U U 3'
CUC CUC CUCUCUGUC CUUGUC
GAG GAG GAGGGAUAG GAGUAG
miRNA 3' 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_210548 | |
| Cross Link | |
|
|
