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| Locus name | AT5G24870 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G24870.1 | Genomic | mRNA | CDS | Protein
AT5G24870.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G24870.1
miRNA: ath-miR162a
miRNA: ath-miR162a
mfe: -27.2 kcal/mol
p-value: 0.008340
position: 1391
target 5' A G U A C 3'
UGGA U GCAGAGGU UUGUUGG
ACCU A CGUCUCCA AAUAGCU
miRNA 3' G 5'
target: AT5G24870.1
miRNA: ath-miR162b
miRNA: ath-miR162b
mfe: -27.2 kcal/mol
p-value: 0.004303
position: 1391
target 5' A G U A C 3'
UGGA U GCAGAGGU UUGUUGG
ACCU A CGUCUCCA AAUAGCU
miRNA 3' G 5'
target: AT5G24870.1
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -24.7 kcal/mol
p-value: 0.012951
position: 1719
target 5' A U U A 3'
GA G AUG UGAUGGAGAUGA
CU C UAC ACUACUUCUACU
miRNA 3' A G U 5'
target: AT5G24870.1
miRNA: ath-miR447c
miRNA: ath-miR447c
mfe: -30.0 kcal/mol
p-value: 0.002909
position: 393
target 5' U U 3'
GAUAAGAG UGUUGUCCCUA
UUGUUUUC ACAGCAGGGGU
miRNA 3' G U U 5'
target: AT5G24870.2
miRNA: ath-miR162a
miRNA: ath-miR162a
mfe: -27.2 kcal/mol
p-value: 0.008819
position: 1509
target 5' A G U A C 3'
UGGA U GCAGAGGU UUGUUGG
ACCU A CGUCUCCA AAUAGCU
miRNA 3' G 5'
target: AT5G24870.2
miRNA: ath-miR162b
miRNA: ath-miR162b
mfe: -27.2 kcal/mol
p-value: 0.004644
position: 1509
target 5' A G U A C 3'
UGGA U GCAGAGGU UUGUUGG
ACCU A CGUCUCCA AAUAGCU
miRNA 3' G 5'
target: AT5G24870.2
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -24.7 kcal/mol
p-value: 0.013799
position: 1837
target 5' A U U A 3'
GA G AUG UGAUGGAGAUGA
CU C UAC ACUACUUCUACU
miRNA 3' A G U 5'
target: AT5G24870.2
miRNA: ath-miR447c
miRNA: ath-miR447c
mfe: -30.0 kcal/mol
p-value: 0.003085
position: 511
target 5' U U 3'
GAUAAGAG UGUUGUCCCUA
UUGUUUUC ACAGCAGGGGU
miRNA 3' G U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_160013 | |
| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
