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| Locus name | AT2G22010 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G22010.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G22010.1
miRNA: ath-miR830
miRNA: ath-miR830
mfe: -23.0 kcal/mol
p-value: 0.014612
position: 1983
target 5' C G U 3'
CACUUCUU UCAGAA GGUU
GUGAAGAA AGUUUU UCAA
miRNA 3' G A U 5'
target: AT2G22010.1
miRNA: ath-miR857
miRNA: ath-miR857
mfe: -21.5 kcal/mol
p-value: 0.126328
position: 2990
target 5' U A A U A 3'
UACAC CUUCAACG U CAAGG
AUGUG GAAGUUGU A GUUUU
miRNA 3' U U 5'
target: AT2G22010.1
miRNA: ath-miR858
miRNA: ath-miR858
mfe: -25.4 kcal/mol
p-value: 0.079899
position: 2203
target 5' G U C 3'
AAGGUUG AUGGAUGAUGAA
UUCCAGC UGUCUGUUGCUU
miRNA 3' U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_132396 | |
| Cross Link | |
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