|
|
| Locus name | AT2G42350 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G42350.1 | Genomic | mRNA | CDS | Protein
|
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
|
| Details | | target: AT2G42350.1
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -27.6 kcal/mol
p-value: 0.006676
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -27.6 kcal/mol
p-value: 0.004890
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -27.6 kcal/mol
p-value: 0.005551
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -27.6 kcal/mol
p-value: 0.005519
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -27.6 kcal/mol
p-value: 0.006288
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -27.6 kcal/mol
p-value: 0.003750
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
target: AT2G42350.1
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -27.6 kcal/mol
p-value: 0.005077
position: 689
target 5' A A C C A 3'
CAGGCGGG UCAUUCU G GUUG
GUCCGUUC AGUAGGA C CGAU
miRNA 3' A 5'
|
|
| Ortholog Group | |
|
| Ortholog Groups: OG5_177745 | |
| Cross Link | |
|
|
|
| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
