Basic information   
Locus name AT3G08690
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryProtein degradation/modification
Effect for Senescenceunclear
Gene Descriptionubiquitin-conjugating enzyme 11 (UBC11) E2; identical to gi:12643427, SP:P35134
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
molecular function
Pathway
SequenceAT3G08690.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_126877
AccessionTaxon
NP_001031228Arabidopsis thaliana
NP_564828Arabidopsis thaliana
NP_565391Arabidopsis thaliana
NP_566331 ( AT3G08690 ) Arabidopsis thaliana
NP_567791Arabidopsis thaliana
NP_568788Arabidopsis thaliana
NP_568835Arabidopsis thaliana
NP_849462Arabidopsis thaliana
NP_851114Arabidopsis thaliana
NP_851115Arabidopsis thaliana
NP_851181Arabidopsis thaliana
NP_851198Arabidopsis thaliana
CMD152CCyanidioschyzon merolae strain 10D
152525Chlamydomonas reinhardtii
NP_113070Guillardia theta
NP_113222Guillardia theta
NP_113233Guillardia theta
NP_113393Guillardia theta
NP_113544Guillardia theta
ACO66863Micromonas sp. RCC299
NP_001043763Oryza sativa Japonica Group
NP_001045711Oryza sativa Japonica Group
NP_001046486Oryza sativa Japonica Group
NP_001054191Oryza sativa Japonica Group
NP_001062791Oryza sativa Japonica Group
e_gw1.14.00.297.1Ostreococcus tauri
estExt_Genewise1.C_5330009Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_650087Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_340032Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_690032Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_690085Physcomitrella patens subsp. patens
28049.m000299Ricinus communis
28128.m000154Ricinus communis
29728.m000818Ricinus communis
30190.m010790Ricinus communis
estExt_fgenesh1_pg.C_chr_40748Thalassiosira pseudonana CCMP1335
XP_002949062Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR240681.3E-1151147No hitNA
SUPERFAMILYSSF544954.6E-672147IPR016135Ubiquitin-conjugating enzyme/RWD-like
ProSiteProfilesPS5012748.84136IPR000608Ubiquitin-conjugating enzyme, E2
SMARTSM002121.4E-804147No hitNA
PfamPF001791.8E-535141IPR000608Ubiquitin-conjugating enzyme, E2
ProSitePatternsPS00183NA7489IPR023313Ubiquitin-conjugating enzyme, active site