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About
Basic information   
Locus name AT2G29070
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryProtein degradation/modification
Effect for Senescenceunclear
Gene Descriptionubiquitin fusion degradation UFD1 family protein similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus}; contains Pfam profile PF03152: Ubiquitin fusion degradation protein UFD1
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
SequenceAT2G29070.1 | Genomic | mRNA | CDS | Protein
AT2G29070.2 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction      
Details
target: AT2G29070.1 
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -30.5 kcal/mol 
p-value: 0.002150 

position:  971 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.1 
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -30.5 kcal/mol 
p-value: 0.001372 

position:  971 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.1 
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -30.5 kcal/mol 
p-value: 0.001365 

position:  971 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.1 
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -30.5 kcal/mol 
p-value: 0.001601 

position:  971 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.1 
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -27.9 kcal/mol 
p-value: 0.008427 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -27.9 kcal/mol 
p-value: 0.006463 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -27.9 kcal/mol 
p-value: 0.007168 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -27.9 kcal/mol 
p-value: 0.007140 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -27.9 kcal/mol 
p-value: 0.008181 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -27.9 kcal/mol 
p-value: 0.005055 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -27.9 kcal/mol 
p-value: 0.006622 

position:  969 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.1 
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -27.8 kcal/mol 
p-value: 0.000269 

position:  120 
target 5' U              G      U 3' 
           AGCUU UGAGCAGU UUACCG  
           UCGAA AUUCGUUA AAUGGU  
miRNA  3'       U        G        5' 
target: AT2G29070.2 
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -30.5 kcal/mol 
p-value: 0.002303 

position:  895 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.2 
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -30.5 kcal/mol 
p-value: 0.001485 

position:  895 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.2 
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -30.5 kcal/mol 
p-value: 0.001476 

position:  895 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.2 
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -30.5 kcal/mol 
p-value: 0.001727 

position:  895 
target 5' A  A   C              A 3' 
           GG AAG UCGUCUUUGGUUCA  
           CC UUC AGUAGGAACCGAGU  
miRNA  3' G  G                    5' 
target: AT2G29070.2 
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -27.9 kcal/mol 
p-value: 0.008897 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -27.9 kcal/mol 
p-value: 0.006897 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -27.9 kcal/mol 
p-value: 0.007608 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -27.9 kcal/mol 
p-value: 0.007582 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -27.9 kcal/mol 
p-value: 0.008698 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -27.9 kcal/mol 
p-value: 0.005420 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -27.9 kcal/mol 
p-value: 0.007045 

position:  893 
target 5' U    A   C            C 3' 
           CAGG AAG UCGUCUUUGGUU  
           GUCC UUC AGUAGGAACCGA  
miRNA  3'      G                U 5' 
target: AT2G29070.2 
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -27.8 kcal/mol 
p-value: 0.000298 

position:  127 
target 5' U              G      U 3' 
           AGCUU UGAGCAGU UUACCG  
           UCGAA AUUCGUUA AAUGGU  
miRNA  3'       U        G        5' 
Ortholog Group      
Ortholog Groups: OG5_127577
AccessionTaxon
NP_001031384Arabidopsis thaliana
NP_001077933Arabidopsis thaliana
NP_180471Arabidopsis thaliana
NP_565504Arabidopsis thaliana
NP_568048Arabidopsis thaliana
NP_973557 ( AT2G29070 ) Arabidopsis thaliana
NP_974709Arabidopsis thaliana
CMK008CCyanidioschyzon merolae strain 10D
106366Chlamydomonas reinhardtii
NP_113220Guillardia theta
NP_001046095Oryza sativa Japonica Group
NP_001053629Oryza sativa Japonica Group
gw1.09.00.308.1Ostreococcus tauri
estExt_fgenesh1_pm.C_2450007Physcomitrella patens subsp. patens
28650.m000184Ricinus communis
30131.m007138Ricinus communis
gw1.3.497.1Thalassiosira pseudonana CCMP1335
XP_002945651Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR125556.1E-1091280IPR004854Ubiquitin fusion degradation protein UFD1
PfamPF031526.6E-721147IPR004854Ubiquitin fusion degradation protein UFD1