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| Locus name | AT2G03530 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:F-box |
| Effect for Senescence | unclear |
| Gene Description | F-box family protein-related similar to A3 protein (Swiss-Prot:Q41706)(unknown function) [Vigna unguiculata]; contains 9 transmembrane domains; supported by tandem duplication of F-box family protein (GI:3805763) (TIGR_Ath1:At2g07140) [Arabidopsis thaliana] |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Sequence | AT2G03530.1 | Genomic | mRNA | CDS | Protein
AT2G03530.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G03530.1
miRNA: ath-miR164c
miRNA: ath-miR164c
mfe: -30.1 kcal/mol
p-value: 0.007533
position: 840
target 5' U G C 3'
CGCA GU CUUUGUUUCUCC
GCGU CA GGGACGAAGAGG
miRNA 3' G C U 5'
target: AT2G03530.2
miRNA: ath-miR164c
miRNA: ath-miR164c
mfe: -30.1 kcal/mol
p-value: 0.007835
position: 885
target 5' U G C 3'
CGCA GU CUUUGUUUCUCC
GCGU CA GGGACGAAGAGG
miRNA 3' G C U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_164294 | |
| Cross Link | |
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| Localization | plasma membrane |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
