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Locus name | AT1G77000 |
Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Protein degradation/modification:F-box | Effect for Senescence | unclear | Gene Description | F-box family protein similar to GP|21554029| F-box protein AtFBL5 from [Arabidopsis thaliana]; similar to F-box protein FBL2 GI:6063090 from [Homo sapiens] | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 | Gene Ontology | | Sequence | AT1G77000.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT1G77000.1 miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -25.8 kcal/mol p-value: 0.027900
position: 235 target 5' G U U 3' UGGAG CUUCUCA GAAGAUU ACCUU GGAGAGU UUUCUAG miRNA 3' G G 5'
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Ortholog Group | |
| Ortholog Groups: OG5_153396 | |
Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR23125 | 7.8E-248 | 1 | 355 | No hit | NA | SUPERFAMILY | SSF81383 | 2.8E-6 | 27 | 63 | IPR001810 | F-box domain, cyclin-like | Pfam | PF00646 | 7.1E-5 | 28 | 62 | IPR001810 | F-box domain, cyclin-like | SMART | SM00367 | 580.0 | 63 | 88 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SUPERFAMILY | SSF52047 | 5.9E-38 | 64 | 321 | No hit | NA | SMART | SM00367 | 140.0 | 89 | 115 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | 2.5E-6 | 116 | 141 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | Pfam | PF13516 | 0.2 | 142 | 162 | No hit | NA | SMART | SM00367 | 6.5E-5 | 142 | 167 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | 0.0 | 168 | 194 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | Pfam | PF13516 | 4.7E-4 | 195 | 218 | No hit | NA | SMART | SM00367 | 5.2E-7 | 195 | 220 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | Pfam | PF13516 | 0.0 | 221 | 245 | No hit | NA | SMART | SM00367 | 1.0E-7 | 221 | 246 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | 3.2E-7 | 247 | 272 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype | SMART | SM00367 | 0.1 | 291 | 316 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
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