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About
Basic information   
Locus name AT4G35060
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers:Metal binding
Effect for Senescenceunclear
Gene Descriptionheavy-metal-associated domain-containing protein / copper chaperone (CCH)-related low similarity to copper homeostasis factor [GI:3168840][PMID:9701579]; similar to farnesylated proteins GMFP7 [Glycine max][GI:4097573] and ATFP6 [GI:4097553]; contains heavy-metal-associated domain PF00403
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
SequenceAT4G35060.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction      
Details
target: AT4G35060.1 
miRNA: ath-miR857
miRNA: ath-miR857
mfe: -23.9 kcal/mol 
p-value: 0.007620 

position:  212 
target 5' C                     U 3' 
           AUAUAUC UCAACAUAUAGAG  
           UAUGUGG AGUUGUAUGUUUU  
miRNA  3'         A               5' 
Ortholog Group      
Ortholog Groups: OG5_132179
AccessionTaxon
NP_172122Arabidopsis thaliana
NP_174205Arabidopsis thaliana
NP_567975 ( AT4G35060 ) Arabidopsis thaliana
NP_001044299Oryza sativa Japonica Group
NP_001057808Oryza sativa Japonica Group
e_gw1.167.134.1Physcomitrella patens subsp. patens
e_gw1.3.274.1Physcomitrella patens subsp. patens
e_gw1.77.105.1Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1070047Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1170066Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1800072Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_230197Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_3150023Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_40004Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_570006Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_570010Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_570014Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_570015Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_570017Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_770025Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_1290062Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_710006Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_770111Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_107000048Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_17000159Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_180000071Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_23000192Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_296000026Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_4000179Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_61000038Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_97000015Physcomitrella patens subsp. patens
gw1.169.125.1Physcomitrella patens subsp. patens
gw1.177.62.1Physcomitrella patens subsp. patens
gw1.274.24.1Physcomitrella patens subsp. patens
gw1.296.20.1Physcomitrella patens subsp. patens
gw1.296.21.1Physcomitrella patens subsp. patens
gw1.296.23.1Physcomitrella patens subsp. patens
gw1.44.109.1Physcomitrella patens subsp. patens
29904.m003022Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR228145.5E-773153No hitNA
PfamPF004031.0E-113084IPR006121Heavy metal-associated domain, HMA
SUPERFAMILYSSF550082.4E-113190IPR006121Heavy metal-associated domain, HMA
ProSiteProfilesPS508469.13389IPR006121Heavy metal-associated domain, HMA
Subcellular Localization   
Localizationcytosol
EvidenceSUBAcon
Pubmed ID23180787