Basic information
Locus name	AT4G30490
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:ATPases
Effect for Senescence	unclear
Gene Description	AFG1-like ATPase family protein contains Pfam profile: PF03969 AFG1-like ATPase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function ATP binding
Sequence	AT4G30490.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G30490.1  miRNA: ath-miR844 miRNA: ath-miR844 mfe: -27.9 kcal/mol  p-value: 0.000660  position:  932  target 5' U    C    U            U 3'             AGCU AUGA GCAAUCUUACUA              UCGA UAUU CGUUAGAAUGGU   miRNA  3'      A                   5'  target: AT4G30490.1  miRNA: ath-miR863-3p miRNA: ath-miR863-3p mfe: -23.0 kcal/mol  p-value: 0.009414  position:  1035  target 5' U                A A    A 3'             GUUAU UCUUGUUGCU C UCGA              UAAUA AGAACAACGA G AGUU   miRNA  3'       C                   5'
Ortholog Group
Ortholog Groups: OG5_127572	Accession Taxon NP_001031737 Arabidopsis thaliana NP_194536 Arabidopsis thaliana NP_567847 ( AT4G30490 ) Arabidopsis thaliana CMJ050C Cyanidioschyzon merolae strain 10D 116326 Chlamydomonas reinhardtii ACO61800 Micromonas sp. RCC299 ACO63008 Micromonas sp. RCC299 NP_001061401 Oryza sativa Japonica Group 0100010063 Ostreococcus tauri 0800010322 Ostreococcus tauri e_gw1.12.56.1 Physcomitrella patens subsp. patens e_gw1.3.119.1 Physcomitrella patens subsp. patens gw1.315.5.1 Physcomitrella patens subsp. patens 27622.m000149 Ricinus communis e_gw1.23.58.1 Thalassiosira pseudonana CCMP1335 e_gw1.4.350.1 Thalassiosira pseudonana CCMP1335 XP_002951435 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12169 1.6E-168 23 493 IPR005654 ATPase, AFG1-like Pfam PF03969 7.9E-92 90 436 IPR005654 ATPase, AFG1-like SUPERFAMILY SSF52540 5.0E-14 158 285 IPR027417 P-loop containing nucleoside triphosphate hydrolase
Subcellular Localization
Localization	mitochondrion
Evidence	SUBAcon
Pubmed ID	23180787