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| Locus name | AT5G57480 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others:ATPases |
| Effect for Senescence | unclear |
| Gene Description | AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family |
| Evidence | Genomic evidence:microarray data [Ref 1]; Molecular evidence:cDNA library [Ref 2] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-852: Y.GUO, Z.CAI, S.GAN.Transcriptome of Arabidopsis leaf senescence.Plant, Cell & Environment 2004, 27(5):521-549. |
| Gene Ontology | |
| Sequence | AT5G57480.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G57480.1
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -26.3 kcal/mol
p-value: 0.004016
position: 1499
target 5' A G C A G 3'
UGA GAU AUGAUGAAGA GA
ACU CUA UACUACUUCU CU
miRNA 3' G C A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_139348 | |
| Cross Link | |
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