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| Locus name | AT5G02780 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others:Defence related |
| Effect for Senescence | unclear |
| Gene Description | In2-1 protein, putative similar to In2-1 [Zea mays] EMBL:X58573 |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G02780.1 | Genomic | mRNA | CDS | Protein
AT5G02780.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G02780.1
miRNA: ath-miR163
miRNA: ath-miR163
mfe: -29.1 kcal/mol
p-value: 0.004188
position: 630
target 5' U C C C C 3'
AUCGAA G UUUCAAGUCUUC UCGA
UAGCUU C AAGGUUCAGGAG AGUU
miRNA 3' A 5'
target: AT5G02780.2
miRNA: ath-miR163
miRNA: ath-miR163
mfe: -29.1 kcal/mol
p-value: 0.004156
position: 624
target 5' U C C C C 3'
AUCGAA G UUUCAAGUCUUC UCGA
UAGCUU C AAGGUUCAGGAG AGUU
miRNA 3' A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_170225 | |
| Cross Link | |
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