Basic information
Locus name	AT2G34810
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Alkaloid biosynthesis
Effect for Senescence	unclear
Gene Description	FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function UDP-N-acetylmuramate dehydrogenase activity flavin adenine dinucleotide binding oxidoreductase activity
Pathway	KEGG map00520 (EC 1.1.1.158) map00550 (EC 1.1.1.158) MetaCyc PWY-6386
Sequence	AT2G34810.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G34810.1  miRNA: ath-miR395a miRNA: ath-miR395a mfe: -26.3 kcal/mol  p-value: 0.034032  position:  1022  target 5' A              U  A    A 3'             GAGUUUCCCUGAGC AC UUUA              CUCAAGGGGGUUUG UG AAGU   miRNA  3'                        C 5'  target: AT2G34810.1  miRNA: ath-miR395d miRNA: ath-miR395d mfe: -26.3 kcal/mol  p-value: 0.034092  position:  1022  target 5' A              U  A    A 3'             GAGUUUCCCUGAGC AC UUUA              CUCAAGGGGGUUUG UG AAGU   miRNA  3'                        C 5'  target: AT2G34810.1  miRNA: ath-miR395e miRNA: ath-miR395e mfe: -26.3 kcal/mol  p-value: 0.035543  position:  1022  target 5' A              U  A    A 3'             GAGUUUCCCUGAGC AC UUUA              CUCAAGGGGGUUUG UG AAGU   miRNA  3'                        C 5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32448 0.0 2 539 No hit NA SUPERFAMILY SSF56176 1.4E-44 53 255 IPR016166 FAD-binding, type 2 ProSiteProfiles PS51387 15.9 79 254 IPR016166 FAD-binding, type 2 Pfam PF01565 2.4E-24 83 220 IPR006094 FAD linked oxidase, N-terminal Pfam PF08031 4.5E-18 479 537 IPR012951 Berberine/berberine-like