Basic information
Locus name	AT1G26390
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:Alkaloid biosynthesis
Effect for Senescence	unclear
Gene Description	FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function UDP-N-acetylmuramate dehydrogenase activity flavin adenine dinucleotide binding oxidoreductase activity
Pathway	KEGG map00520 (EC 1.1.1.158) map00550 (EC 1.1.1.158) MetaCyc PWY-6386
Sequence	AT1G26390.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G26390.1  miRNA: ath-miR399a miRNA: ath-miR399a mfe: -27.0 kcal/mol  p-value: 0.013256  position:  676  target 5' U   A A            G   A 3'             GGG G AGAUCUCUUUUG GCA              UCC C UUUAGAGGAAAC CGU   miRNA  3' G     G                  5'  target: AT1G26390.1  miRNA: ath-miR399d miRNA: ath-miR399d mfe: -29.0 kcal/mol  p-value: 0.006519  position:  675  target 5' A    A A            G   A 3'             UGGG G AGAUCUCUUUUG GCA              GCCC C UUUAGAGGAAAC CGU   miRNA  3'        G                  5'
Ortholog Group
Ortholog Groups: OG5_146855	Accession Taxon NP_173964 Arabidopsis thaliana NP_173965 Arabidopsis thaliana NP_173966 Arabidopsis thaliana NP_193812 Arabidopsis thaliana NP_564244 Arabidopsis thaliana NP_564245 ( AT1G26390 ) Arabidopsis thaliana 29776.m000479 Ricinus communis 30075.m001142 Ricinus communis 30075.m001143 Ricinus communis 30075.m001144 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32448 0.0 1 530 No hit NA SUPERFAMILY SSF56176 1.9E-48 24 248 IPR016166 FAD-binding, type 2 ProSiteProfiles PS51387 16.9 73 247 IPR016166 FAD-binding, type 2 Pfam PF01565 3.9E-26 79 214 IPR006094 FAD linked oxidase, N-terminal Pfam PF08031 9.7E-20 468 525 IPR012951 Berberine/berberine-like