Basic information   
Locus name AT3G56170
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNucleic acid degradation
Effect for Senescenceunclear
Gene DescriptionCa(2+)-dependent nuclease identical to Ca(2+)-dependent nuclease [Arabidopsis thaliana] GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
molecular function
SequenceAT3G56170.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_136914
AccessionTaxon
NP_567036 ( AT3G56170 ) Arabidopsis thaliana
NP_973649Arabidopsis thaliana
CMK224CCyanidioschyzon merolae strain 10D
129012Chlamydomonas reinhardtii
NP_001042112Oryza sativa Japonica Group
NP_001066504Oryza sativa Japonica Group
estExt_fgenesh1_pg.C_290057Physcomitrella patens subsp. patens
29729.m002312Ricinus communis
XP_002957539Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR314451.5E-1361323No hitNA
ProSiteProfilesPS5083031.5130306IPR006021Staphylococcal nuclease (SNase-like)
SMARTSM003183.2E-30130306IPR006021Staphylococcal nuclease (SNase-like)
SUPERFAMILYSSF501991.2E-31132148IPR016071Staphylococcal nuclease (SNase-like), OB-fold
SUPERFAMILYSSF501991.2E-31205313IPR016071Staphylococcal nuclease (SNase-like), OB-fold
PfamPF005651.0E-27211305IPR006021Staphylococcal nuclease (SNase-like)
ProSitePatternsPS01284NA251261IPR002071Thermonuclease active site