Leaf Senescence DataBase

Basic information

Locus name

AT2G02710

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Signal transduction

Effect for Senescence

unclear

Gene Description

PAC motif-containing protein similar to nonphototropic hypocotyl 1 [Zea mays] GI:2687358; contains Pfam profile PF00785: PAC motif

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	signal transduction
molecular function	phosphorelay sensor kinase activity signal transducer activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT2G02710.1
miRNA: ath-miR841
miRNA: ath-miR841
mfe: -24.6 kcal/mol
p-value: 0.019257

position:  557
target 5' A      G      A      U 3'
           UCAG U CAAGUG GCUUGU
           AGUC A GUUCAC CGAGCA
miRNA  3' A    A A             U 5'

target: AT2G02710.1
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -28.4 kcal/mol
p-value: 0.016911

position:  48
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.1
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -28.4 kcal/mol
p-value: 0.017938

position:  48
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.1
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -28.4 kcal/mol
p-value: 0.016613

position:  48
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.1
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -28.4 kcal/mol
p-value: 0.018103

position:  48
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.1
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -28.4 kcal/mol
p-value: 0.018672

position:  48
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.2
miRNA: ath-miR841
miRNA: ath-miR841
mfe: -24.6 kcal/mol
p-value: 0.021181

position:  699
target 5' A      G      A      U 3'
           UCAG U CAAGUG GCUUGU
           AGUC A GUUCAC CGAGCA
miRNA  3' A    A A             U 5'

target: AT2G02710.2
miRNA: ath-miR854a
miRNA: ath-miR854a
mfe: -28.4 kcal/mol
p-value: 0.018683

position:  190
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.2
miRNA: ath-miR854b
miRNA: ath-miR854b
mfe: -28.4 kcal/mol
p-value: 0.019531

position:  190
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.2
miRNA: ath-miR854c
miRNA: ath-miR854c
mfe: -28.4 kcal/mol
p-value: 0.018304

position:  190
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.2
miRNA: ath-miR854d
miRNA: ath-miR854d
mfe: -28.4 kcal/mol
p-value: 0.020059

position:  190
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.2
miRNA: ath-miR854e
miRNA: ath-miR854e
mfe: -28.4 kcal/mol
p-value: 0.020373

position:  190
target 5' U       G             C 3'
           CUCCUCU UCUUAUCUUC UC
           GAGGAGG GGGAUAGGAG AG
miRNA  3'         A          U    5'

target: AT2G02710.3
miRNA: ath-miR841
miRNA: ath-miR841
mfe: -24.6 kcal/mol
p-value: 0.018272

position:  502
target 5' A      G      A      U 3'
           UCAG U CAAGUG GCUUGU
           AGUC A GUUCAC CGAGCA
miRNA  3' A    A A             U 5'

Ortholog Group

Ortholog Groups: OG5_138569

Accession	Taxon
NP_565288 ( AT2G02710 )	Arabidopsis thaliana
NP_849928	Arabidopsis thaliana
NP_973401	Arabidopsis thaliana
NP_001042244	Oryza sativa Japonica Group
e_gw1.199.115.1	Physcomitrella patens subsp. patens
gw1.318.21.1	Physcomitrella patens subsp. patens
29736.m002040	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00091	1.8	26	99	IPR000014	PAS domain
SUPERFAMILY	SSF55785	6.1E-19	40	138	IPR000014	PAS domain
PANTHER	PTHR23244	1.1E-57	41	144	No hit	NA
Pfam	PF13426	3.1E-20	41	141	No hit	NA
ProSiteProfiles	PS50112	9.9	47	97	IPR000014	PAS domain
TIGRFAM	TIGR00229	1.6E-9	51	150	IPR000014	PAS domain
ProSiteProfiles	PS50113	10.2	98	153	IPR000700	PAS-associated, C-terminal
SMART	SM00086	1.3E-4	101	144	IPR001610	PAC motif
SMART	SM00091	13.0	248	321	IPR000014	PAS domain
SUPERFAMILY	SSF55785	3.1E-20	264	361	IPR000014	PAS domain
Pfam	PF13426	1.7E-19	269	361	No hit	NA
ProSiteProfiles	PS50112	9.8	273	295	IPR000014	PAS domain
TIGRFAM	TIGR00229	8.1E-11	273	362	IPR000014	PAS domain
ProSiteProfiles	PS50113	9.8	320	376	IPR000700	PAS-associated, C-terminal
SMART	SM00086	0.2	323	367	IPR001610	PAC motif