Basic information
Locus name	AT4G32070
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein similar to SP|Q99614 Tetratricopeptide repeat protein 1 {Homo sapiens}; contains Pfam profiles PF00564: PB1 domain, PF00515: TPR Domain
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT4G32070.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G32070.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -25.4 kcal/mol  p-value: 0.029572  position:  723  target 5' G     A              A 3'             UGGGA GGAUGAGGAACUGA              ACUUU CUUGUUCUUUGACU   miRNA  3'       G              A 5'
Ortholog Group
Ortholog Groups: OG5_150243	Accession Taxon NP_001154534 Arabidopsis thaliana NP_180101 Arabidopsis thaliana NP_194935 ( AT4G32070 ) Arabidopsis thaliana 186231 Chlamydomonas reinhardtii ACO69744 Micromonas sp. RCC299 NP_001061478 Oryza sativa Japonica Group NP_001063897 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_01.0001000180 Ostreococcus tauri 29848.m004583 Ricinus communis 29850.m000271 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR22904 1.3E-279 5 742 No hit NA SUPERFAMILY SSF48452 5.5E-23 40 162 No hit NA Pfam PF13414 1.9E-14 50 122 No hit NA ProSiteProfiles PS50005 8.7 51 84 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50293 15.9 51 158 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00028 0.4 51 84 IPR019734 Tetratricopeptide repeat SMART SM00028 76.0 89 124 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50005 6.8 125 158 IPR019734 Tetratricopeptide repeat SMART SM00028 18.0 125 158 IPR019734 Tetratricopeptide repeat SUPERFAMILY SSF54277 4.5E-16 314 405 No hit NA Pfam PF00564 2.1E-15 317 393 IPR000270 Phox/Bem1p SMART SM00666 1.7E-18 317 396 IPR000270 Phox/Bem1p SUPERFAMILY SSF48452 7.6E-7 437 517 No hit NA ProSiteProfiles PS50005 7.6 532 565 IPR019734 Tetratricopeptide repeat ProSiteProfiles PS50293 8.1 532 565 IPR013026 Tetratricopeptide repeat-containing domain SMART SM00028 38.0 532 565 IPR019734 Tetratricopeptide repeat SUPERFAMILY SSF48452 7.6E-7 546 614 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787