Basic information   
Locus name AT5G63970
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categorySignal transduction:Calcium
Effect for Senescenceunclear
Gene Descriptioncopine-related low similarity to SP|Q99829 Copine I {Homo sapiens}
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
molecular function
SequenceAT5G63970.1 | Genomic | mRNA | CDS | Protein
AT5G63970.2 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_130070
AccessionTaxon
NP_001032132 ( AT5G63970 ) Arabidopsis thaliana
NP_001077787Arabidopsis thaliana
NP_186814Arabidopsis thaliana
NP_196946Arabidopsis thaliana
NP_201202Arabidopsis thaliana
NP_564907Arabidopsis thaliana
NP_565206Arabidopsis thaliana
NP_849857Arabidopsis thaliana
NP_850818Arabidopsis thaliana
NP_974100Arabidopsis thaliana
NP_974779Arabidopsis thaliana
NP_974780Arabidopsis thaliana
119111Chlamydomonas reinhardtii
NP_001045146Oryza sativa Japonica Group
NP_001045467Oryza sativa Japonica Group
NP_001058043Oryza sativa Japonica Group
NP_001060941Oryza sativa Japonica Group
NP_001066593Oryza sativa Japonica Group
e_gw1.423.9.1Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_300060Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_3880002Physcomitrella patens subsp. patens
gw1.49.166.1Physcomitrella patens subsp. patens
29633.m000935Ricinus communis
29929.m004795Ricinus communis
29992.m001423Ricinus communis
30147.m013839Ricinus communis
XP_002955260Volvox carteri f. nagariensis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR108577.9E-14112289No hitNA
SMARTSM003272.7E-535237IPR002035von Willebrand factor, type A
SUPERFAMILYSSF533001.2E-1036219No hitNA
PfamPF070022.8E-5260208IPR010734Copine
PfamPF139207.4E-9322361No hitNA
SUPERFAMILYSSF578503.4E-8322362No hitNA
ProSiteProfilesPS5008911.4323356IPR001841Zinc finger, RING-type