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About
Basic information   
Locus name AT5G43780
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryNutrient recycling:Sulphur mobilisation
Effect for Senescenceunclear
Gene Descriptionsulfate adenylyltransferase 4 / ATP-sulfurylase 4 (APS4) identical to ATP sulfurylase precursor (APS4) [Arabidopsis thaliana] GI:4633131
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
Pathway
KEGG
MetaCyc
Reactome
SequenceAT5G43780.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction      
Details
target: AT5G43780.1 
miRNA: ath-miR395a
miRNA: ath-miR395a
mfe: -39.0 kcal/mol 
p-value: 0.000029 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAAGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
target: AT5G43780.1 
miRNA: ath-miR395b
miRNA: ath-miR395b
mfe: -38.5 kcal/mol 
p-value: 0.000456 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAGGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
target: AT5G43780.1 
miRNA: ath-miR395c
miRNA: ath-miR395c
mfe: -38.5 kcal/mol 
p-value: 0.000129 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAGGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
target: AT5G43780.1 
miRNA: ath-miR395d
miRNA: ath-miR395d
mfe: -39.0 kcal/mol 
p-value: 0.000182 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAAGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
target: AT5G43780.1 
miRNA: ath-miR395e
miRNA: ath-miR395e
mfe: -39.0 kcal/mol 
p-value: 0.000046 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAAGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
target: AT5G43780.1 
miRNA: ath-miR395f
miRNA: ath-miR395f
mfe: -38.5 kcal/mol 
p-value: 0.000277 

position:  394 
target 5' A                    U 3' 
           GAGUUCCUCCAAACACUUCA  
           CUCAGGGGGGUUUGUGAAGU  
miRNA  3'                      C 5' 
Ortholog Group      
Ortholog Groups: OG5_127271
AccessionTaxon
NP_179082Arabidopsis thaliana
NP_187040Arabidopsis thaliana
NP_188929Arabidopsis thaliana
NP_193204Arabidopsis thaliana
NP_195704Arabidopsis thaliana
NP_199191 ( AT5G43780 ) Arabidopsis thaliana
NP_564099Arabidopsis thaliana
NP_569050Arabidopsis thaliana
CMB151CCyanidioschyzon merolae strain 10D
CMS096CCyanidioschyzon merolae strain 10D
184419Chlamydomonas reinhardtii
ACO68301Micromonas sp. RCC299
NP_001051234Oryza sativa Japonica Group
NP_001060064Oryza sativa Japonica Group
NP_001068326Oryza sativa Japonica Group
estExt_genewise1.C_Chr_09.00010262Ostreococcus tauri
e_gw1.166.13.1Physcomitrella patens subsp. patens
e_gw1.245.42.1Physcomitrella patens subsp. patens
e_gw1.3146.1.1Physcomitrella patens subsp. patens
e_gw1.331.11.1Physcomitrella patens subsp. patens
e_gw1.49.181.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_3360018Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_160165Physcomitrella patens subsp. patens
29661.m000920Ricinus communis
29812.m000192Ricinus communis
29844.m003210Ricinus communis
29950.m001128Ricinus communis
30170.m014166Ricinus communis
e_gw1.6.527.1Thalassiosira pseudonana CCMP1335
estExt_thaps1_ua_kg.C_chr_130130Thalassiosira pseudonana CCMP1335
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR247990.01468No hitNA
PfamPF143063.6E-4054217IPR025980ATP-sulfurylase PUA-like domain
SUPERFAMILYSSF886971.6E-4256221IPR015947PUA-like domain
TIGRFAMTIGR003397.1E-13456448IPR002650Sulphate adenylyltransferase
PfamPF017471.7E-65226450IPR024951Sulphate adenylyltransferase catalytic domain
SUPERFAMILYSSF523742.8E-73227450No hitNA
Subcellular Localization   
Localization 1
Localizationchloroplast
EvidenceLocalization with GFP-fusion protein (GFP:cDNA)
Pubmed ID10737809
Localization 2
Localizationplastid
EvidenceSUBAcon
Pubmed ID23180787