Basic information
Locus name	AT3G22840
Alias	ELIP
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Chlorophyll degradation
Effect for Senescence	unclear
Gene Description	chlorophyll A-B binding family protein / early light-induced protein (ELIP) identical to early light-induced protein; ELIP [Arabidopsis thaliana] GI:1872544; contains Pfam profile: PF00504 chlorophyll A-B binding protein; identical to cDNA early light-induced protein GI:1872543
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT3G22840.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G22840.1  miRNA: ath-miR1888 miRNA: ath-miR1888 mfe: -20.2 kcal/mol  p-value: 0.027656  position:  9  target 5' C    A    C            A 3'             UUCU CACA GAUCU AGCUUA              AAGA GUGU UUAGA UUGAAU   miRNA  3'      A          A        5'
Ortholog Group
Ortholog Groups: OG5_132960	Accession Taxon NP_188923 ( AT3G22840 ) Arabidopsis thaliana NP_567438 Arabidopsis thaliana 148418 Chlamydomonas reinhardtii 148916 Chlamydomonas reinhardtii 167849 Chlamydomonas reinhardtii 167850 Chlamydomonas reinhardtii 182724 Chlamydomonas reinhardtii ACO66541 Micromonas sp. RCC299 ACO67386 Micromonas sp. RCC299 NP_001042574 Oryza sativa Japonica Group NP_001059029 Oryza sativa Japonica Group NP_001059030 Oryza sativa Japonica Group e_gw1.04.00.461.1 Ostreococcus tauri e_gw1.10.160.1 Physcomitrella patens subsp. patens e_gw1.15.284.1 Physcomitrella patens subsp. patens e_gw1.15.427.1 Physcomitrella patens subsp. patens e_gw1.172.26.1 Physcomitrella patens subsp. patens e_gw1.25.116.1 Physcomitrella patens subsp. patens e_gw1.255.33.1 Physcomitrella patens subsp. patens e_gw1.308.16.1 Physcomitrella patens subsp. patens e_gw1.308.25.1 Physcomitrella patens subsp. patens e_gw1.308.29.1 Physcomitrella patens subsp. patens e_gw1.371.45.1 Physcomitrella patens subsp. patens e_gw1.46.246.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1960055 Physcomitrella patens subsp. patens estExt_fgenesh2_pg.C_780047 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2550043 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_239000015 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_262000011 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_10000026 Physcomitrella patens subsp. patens fgenesh2_pm.scaffold_140000001 Physcomitrella patens subsp. patens 29844.m003220 Ricinus communis XP_002947126 Volvox carteri f. nagariensis XP_002949317 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR14154 3.3E-60 29 195 No hit NA SUPERFAMILY SSF103511 5.0E-20 63 191 IPR023329 Chlorophyll a/b binding protein domain Pfam PF00504 3.3E-8 96 187 IPR022796 Chlorophyll A-B binding protein