Basic information
Locus name	AT4G29100
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:ET
Effect for Senescence	promote
Gene Description	ethylene-responsive family protein contains similarity to ethylene-inducible ER33 protein [Lycopersicon esculentum] gi|5669656|gb|AAD46413
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein dimerization activity
Sequence	AT4G29100.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G29100.1  miRNA: ath-miR413 miRNA: ath-miR413 mfe: -23.5 kcal/mol  p-value: 0.077487  position:  929  target 5' G                    G 3'             GUG AGAA AGGAGAAACUA              CAC UCUU UUCUCUUUGAU   miRNA  3'     G    G           A 5'  target: AT4G29100.1  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -31.2 kcal/mol  p-value: 0.004591  position:  166  target 5' C   G            A   C 3'             GCC GUUCAGCAGCUG UGG              UGG CGAGUUGUCGAC AUC   miRNA  3'     A            G   U 5'
Ortholog Group
Ortholog Groups: OG5_153198	Accession Taxon NP_001077923 Arabidopsis thaliana NP_179600 Arabidopsis thaliana NP_194639 ( AT4G29100 ) Arabidopsis thaliana NP_001042492 Oryza sativa Japonica Group NP_001046546 Oryza sativa Japonica Group NP_001054971 Oryza sativa Japonica Group 29912.m005485 Ricinus communis 30146.m003550 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31825 3.8E-158 2 407 No hit NA ProSiteProfiles PS50888 11.3 253 302 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SUPERFAMILY SSF47459 6.0E-10 263 314 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787