Leaf Senescence DataBase

Basic information

Locus name

AT5G20960

Alias

AAO1

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Hormone response pathway:Auxin

Effect for Senescence

unclear

Gene Description

aldehyde oxidase 1 (AAO1) identical to aldehyde oxidase AAO1 from Arabidopsis thaliana [gi:3172023] isoform contains a GA-donor splice site at intron 10

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	oxidation-reduction process
molecular function	electron carrier activity iron ion binding iron-sulfur cluster binding metal ion binding oxidoreductase activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT5G20960.1
miRNA: ath-miR2112-3p
miRNA: ath-miR2112-3p
mfe: -29.8 kcal/mol
p-value: 0.004116

position:  617
target 5' U   A              C    A 3'
           UGC GCGGAUGUGGAUAU GAAG
           ACG CGUUUACGCCUAUA UUUC
miRNA  3'                           5'

target: AT5G20960.1
miRNA: ath-miR783
miRNA: ath-miR783
mfe: -25.1 kcal/mol
p-value: 0.065344

position:  3616
target 5' G       C             G 3'
           GAAU UG AGCGAGCGAGGUU
           CUUG AC UUGCUCGUUUCGA
miRNA  3'      U                A 5'

target: AT5G20960.1
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.9 kcal/mol
p-value: 0.039067

position:  915
target 5' A      A              U 3'
           GAGAGG AGUACGAA AGAUU
           UUCUUC UCAUGCUU UCUAG
miRNA  3' G               C     U 5'

target: AT5G20960.1
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -23.6 kcal/mol
p-value: 0.112660

position:  4018
target 5' A U   A              A 3'
           G AAU AACAAGGGACUGAU
           C UUG UUGUUCUUUGACUA
miRNA  3' A U   C                5'

target: AT5G20960.1
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -23.4 kcal/mol
p-value: 0.061043

position:  2418
target 5' C        U            C 3'
           AACU GUA GGUGGUUUAUAG
           UUGA CAU CUACCGAAUAUU
miRNA  3'      U   U              5'

target: AT5G20960.1
miRNA: ath-miR857
miRNA: ath-miR857
mfe: -23.7 kcal/mol
p-value: 0.049030

position:  2581
target 5' U        G      C     U 3'
           GUGCACUU CAGCAU CAAAA
           UAUGUGGA GUUGUA GUUUU
miRNA  3'          A      U       5'

target: AT5G20960.2
miRNA: ath-miR2112-3p
miRNA: ath-miR2112-3p
mfe: -29.8 kcal/mol
p-value: 0.004053

position:  617
target 5' U   A              C    A 3'
           UGC GCGGAUGUGGAUAU GAAG
           ACG CGUUUACGCCUAUA UUUC
miRNA  3'                           5'

target: AT5G20960.2
miRNA: ath-miR783
miRNA: ath-miR783
mfe: -25.1 kcal/mol
p-value: 0.064597

position:  3616
target 5' G       C             G 3'
           GAAU UG AGCGAGCGAGGUU
           CUUG AC UUGCUCGUUUCGA
miRNA  3'      U                A 5'

target: AT5G20960.2
miRNA: ath-miR831
miRNA: ath-miR831
mfe: -25.9 kcal/mol
p-value: 0.038651

position:  915
target 5' A      A              U 3'
           GAGAGG AGUACGAA AGAUU
           UUCUUC UCAUGCUU UCUAG
miRNA  3' G               C     U 5'

target: AT5G20960.2
miRNA: ath-miR837-5p
miRNA: ath-miR837-5p
mfe: -23.6 kcal/mol
p-value: 0.111417

position:  4018
target 5' A U   A              A 3'
           G AAU AACAAGGGACUGAU
           C UUG UUGUUCUUUGACUA
miRNA  3' A U   C                5'

target: AT5G20960.2
miRNA: ath-miR844
miRNA: ath-miR844
mfe: -23.4 kcal/mol
p-value: 0.060132

position:  2418
target 5' C        U            C 3'
           AACU GUA GGUGGUUUAUAG
           UUGA CAU CUACCGAAUAUU
miRNA  3'      U   U              5'

target: AT5G20960.2
miRNA: ath-miR857
miRNA: ath-miR857
mfe: -23.7 kcal/mol
p-value: 0.048440

position:  2581
target 5' U        G      C     U 3'
           GUGCACUU CAGCAU CAAAA
           UAUGUGGA GUUGUA GUUUU
miRNA  3'          A      U       5'

Ortholog Group

Ortholog Groups: OG5_127252

Accession	Taxon
NP_001077966	Arabidopsis thaliana
NP_180283	Arabidopsis thaliana
NP_189946	Arabidopsis thaliana
NP_195215	Arabidopsis thaliana
NP_195216	Arabidopsis thaliana
NP_563711	Arabidopsis thaliana
NP_568407 ( AT5G20960 )	Arabidopsis thaliana
NP_851049	Arabidopsis thaliana
117669	Chlamydomonas reinhardtii
ACO65070	Micromonas sp. RCC299
NP_001050420	Oryza sativa Japonica Group
NP_001051517	Oryza sativa Japonica Group
NP_001051518	Oryza sativa Japonica Group
NP_001058964	Oryza sativa Japonica Group
NP_001059379	Oryza sativa Japonica Group
NP_001064133	Oryza sativa Japonica Group
e_gw1.170.7.1	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_440069	Physcomitrella patens subsp. patens
estExt_fgenesh1_pm.C_930001	Physcomitrella patens subsp. patens
29976.m000486	Ricinus communis
30169.m006431	Ricinus communis
47744.m000020	Ricinus communis
estExt_thaps1_ua_kg.C_chr_220040	Thalassiosira pseudonana CCMP1335
XP_002953715	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF000127	0.0	13	1368	IPR016208	Aldehyde oxidase/xanthine dehydrogenase
ProSiteProfiles	PS51085	9.5	19	108	IPR001041	2Fe-2S ferredoxin-type domain
SUPERFAMILY	SSF54292	2.0E-18	20	108	IPR001041	2Fe-2S ferredoxin-type domain
PANTHER	PTHR11908	0.0	21	1368	No hit	NA
Pfam	PF00111	2.0E-6	25	93	IPR001041	2Fe-2S ferredoxin-type domain
ProSitePatterns	PS00197	NA	60	68	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site
Pfam	PF01799	5.7E-18	106	189	IPR002888	[2Fe-2S]-binding
SUPERFAMILY	SSF47741	2.5E-27	116	227	IPR002888	[2Fe-2S]-binding
SUPERFAMILY	SSF56176	7.6E-43	225	424	IPR016166	FAD-binding, type 2
ProSiteProfiles	PS51387	20.7	246	427	IPR016166	FAD-binding, type 2
Pfam	PF00941	7.5E-44	250	425	IPR002346	Molybdopterin dehydrogenase, FAD-binding
SUPERFAMILY	SSF55447	4.6E-17	440	551	IPR005107	CO dehydrogenase flavoprotein, C-terminal
SMART	SM01092	8.1E-10	442	548	IPR005107	CO dehydrogenase flavoprotein, C-terminal
Pfam	PF03450	2.6E-21	443	546	IPR005107	CO dehydrogenase flavoprotein, C-terminal
SUPERFAMILY	SSF54665	5.9E-35	588	722	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
Pfam	PF01315	5.3E-35	611	720	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
SMART	SM01008	3.4E-30	611	721	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
SUPERFAMILY	SSF56003	3.5E-159	724	1350	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
Pfam	PF02738	1.9E-187	732	1271	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding

Subcellular Localization

Localization

cytosol,plasma membrane

Evidence

SUBAcon

Pubmed ID

23180787