Basic information
Locus name	AT5G61640
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:Antioxidants
Effect for Senescence	unclear
Gene Description	peptide methionine sulfoxide reductase, putative similar to peptide methionine sulfoxide reductase (msr) [Arabidopsis thaliana] GI:4884033; contains Pfam profile PF01625: Peptide methionine sulfoxide reductase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process molecular function peptide-methionine (S)-S-oxide reductase activity
Sequence	AT5G61640.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_126847	Accession Taxon NP_179394 Arabidopsis thaliana NP_194243 Arabidopsis thaliana NP_196363 Arabidopsis thaliana NP_196364 Arabidopsis thaliana NP_568937 ( AT5G61640 ) Arabidopsis thaliana NP_973483 Arabidopsis thaliana CMS061C Cyanidioschyzon merolae strain 10D 184206 Chlamydomonas reinhardtii 187796 Chlamydomonas reinhardtii 189675 Chlamydomonas reinhardtii 196103 Chlamydomonas reinhardtii 196104 Chlamydomonas reinhardtii ACO62476 Micromonas sp. RCC299 ACO66466 Micromonas sp. RCC299 ACO67529 Micromonas sp. RCC299 ACO67664 Micromonas sp. RCC299 NP_001053116 Oryza sativa Japonica Group NP_001056737 Oryza sativa Japonica Group NP_001065403 Oryza sativa Japonica Group e_gw1.09.00.407.1 Ostreococcus tauri estExt_gwp_GeneWisePlus.C_Chr_14.00010054 Ostreococcus tauri gw1.12.00.324.1 Ostreococcus tauri e_gw1.97.9.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_3040009 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_4470004 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_950004 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1740036 Physcomitrella patens subsp. patens 27471.m000422 Ricinus communis 30147.m014342 Ricinus communis e_gw1.1.786.1 Thalassiosira pseudonana CCMP1335 e_gw1.19a.86.1 Thalassiosira pseudonana CCMP1335 e_gw1.3.587.1 Thalassiosira pseudonana CCMP1335 XP_002947081 Volvox carteri f. nagariensis XP_002949120 Volvox carteri f. nagariensis XP_002949989 Volvox carteri f. nagariensis XP_002952959 Volvox carteri f. nagariensis XP_002958724 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10173 8.5E-82 10 201 No hit NA SUPERFAMILY SSF55068 1.6E-67 31 182 IPR002569 Peptide methionine sulphoxide reductase MsrA Hamap MF_01401 33.8 35 192 IPR002569 Peptide methionine sulphoxide reductase MsrA Pfam PF01625 4.1E-60 39 181 IPR002569 Peptide methionine sulphoxide reductase MsrA TIGRFAM TIGR00401 5.5E-61 39 180 IPR002569 Peptide methionine sulphoxide reductase MsrA
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787