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Locus name | AT1G06570 |
Alias | PDS1 | Organism | Arabidopsis thaliana | Taxonomic identifier | [NCBI] | Function category | Redox regulation:Antioxidants | Effect for Senescence | unclear | Gene Description | PHYTOENE DESATURATION 1 (PDS1); FUNCTIONS IN: 4-hydroxyphenylpyruvate dioxygenase activity; INVOLVED IN: carotenoid biosynthetic process, plastoquinone biosynthetic process, vitamin E biosynthetic process. Gene expression is increased during leaf senescence. | Evidence | Genomic evidence:microarray data [Ref 1, Ref 2] | References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-852: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | Gene Ontology | | Sequence | AT1G06570.1 | Genomic | mRNA | CDS | Protein AT1G06570.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) | Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
| Details | | target: AT1G06570.1 miRNA: ath-miR835-5p miRNA: ath-miR835-5p mfe: -20.3 kcal/mol p-value: 0.038231
position: 1023 target 5' A U C 3' GUGAAGA CAUAU CAGGA UAUUUCU GUAUA GUUCU miRNA 3' C U C U 5'
target: AT1G06570.2 miRNA: ath-miR835-5p miRNA: ath-miR835-5p mfe: -20.3 kcal/mol p-value: 0.038078
position: 1023 target 5' A U C 3' GUGAAGA CAUAU CAGGA UAUUUCU GUAUA GUUCU miRNA 3' C U C U 5'
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Ortholog Group | |
| Ortholog Groups: OG5_129448 | |
Cross Link | |
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| Localization 1 | Localization | cytosol | Evidence | Localization with GFP-fusion protein (GFP:cDNA) | Pubmed ID | 10737809 |
| Localization 2 | Localization | cytosol | Evidence | SUBAcon | Pubmed ID | 23180787 |
| Localization 3 | Localization | mitochondrion | Evidence | SUBAcon | Pubmed ID | 23180787 |
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