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| Locus name | AT5G04340 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:C2H2 |
| Effect for Senescence | unclear |
| Gene Description | zinc finger (C2H2 type) family protein contains Pfam domain |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G04340.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G04340.1
miRNA: ath-miR404
miRNA: ath-miR404
mfe: -32.6 kcal/mol
p-value: 0.002831
position: 443
target 5' A A A C 3'
GCUGUCG C AUCGUCGGCG UAA
CGACGGC G UGGCGGUCGC AUU
miRNA 3' U A A 5'
target: AT5G04340.1
miRNA: ath-miR779
miRNA: ath-miR779
mfe: -26.8 kcal/mol
p-value: 0.007217
position: 603
target 5' U C U 3'
GUGAGUAGUAGCGU GU GAA
UACUCGUCGUUGUA CG CUU
miRNA 3' U U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_146894 | |
| Cross Link | |
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