Basic information
Locus name	AT1G63490
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:JUMONJI
Effect for Senescence	unclear
Gene Description	transcription factor jumonji (jmjC) domain-containing protein similar to PLU-1 protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process oxidation-reduction process cellular component nucleus molecular function oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors protein binding
Pathway	KEGG map00260 (EC 1.14.11.-) map00402 (EC 1.14.11.-) map00904 (EC 1.14.11.-)
Sequence	AT1G63490.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_127370	Accession Taxon NP_001031681 Arabidopsis thaliana NP_172338 Arabidopsis thaliana NP_174367 Arabidopsis thaliana NP_181034 Arabidopsis thaliana NP_193773 Arabidopsis thaliana NP_564814 ( AT1G63490 ) Arabidopsis thaliana CMT461C Cyanidioschyzon merolae strain 10D ACO61157 Micromonas sp. RCC299 ACO61743 Micromonas sp. RCC299 ACO64524 Micromonas sp. RCC299 NP_001054867 Oryza sativa Japonica Group NP_001055137 Oryza sativa Japonica Group 0800010110 Ostreococcus tauri 1300010225 Ostreococcus tauri fgenesh1_pg.C_Chr_03.0001000251 Ostreococcus tauri e_gw1.127.10.1 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_235000001 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_235000018 Physcomitrella patens subsp. patens 29611.m000235 Ricinus communis 29680.m001692 Ricinus communis 29776.m000471 Ricinus communis 30190.m011218 Ricinus communis fgenesh1_pg.C_chr_2000092 Thalassiosira pseudonana CCMP1335 XP_002948044 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10694 0.0 1 1050 No hit NA SUPERFAMILY SSF51197 6.6E-32 31 214 No hit NA ProSiteProfiles PS51184 37.0 33 199 IPR003347 JmjC domain SMART SM00558 5.8E-68 33 199 IPR003347 JmjC domain Pfam PF02373 3.1E-42 66 182 IPR003347 JmjC domain Pfam PF02928 1.3E-17 276 329 IPR004198 Zinc finger, C5HC2-type Pfam PF08429 2.0E-7 372 538 IPR013637 Lysine-specific demethylase-like domain Coils Coil NA 473 494 No hit NA Pfam PF08429 7.7E-9 547 649 IPR013637 Lysine-specific demethylase-like domain Pfam PF08429 9.6E-21 594 842 IPR013637 Lysine-specific demethylase-like domain Pfam PF08429 3.2E-5 878 997 IPR013637 Lysine-specific demethylase-like domain SUPERFAMILY SSF57903 2.5E-10 1007 1055 IPR011011 Zinc finger, FYVE/PHD-type SMART SM00249 8.7E-4 1009 1051 IPR001965 Zinc finger, PHD-type ProSitePatterns PS01359 NA 1010 1050 IPR019786 Zinc finger, PHD-type, conserved site
Mutant Image
normal leaf senescence