Basic information
Locus name	AT2G29060
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:GRAS
Effect for Senescence	unclear
Gene Description	scarecrow transcription factor family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Sequence	AT2G29060.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G29060.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.4 kcal/mol  p-value: 0.114028  position:  3840  target 5' G   U    U      A       C 3'             UGA AGCG GCGAGG AGCUGAU              ACU UUGC UGUUCU UUGACUA   miRNA  3'          U                5'  target: AT2G29060.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -24.2 kcal/mol  p-value: 0.081512  position:  3633  target 5' U      U          A   A 3'             UGAAGC AAUAAGAAAC UGA              ACUUUG UUGUUCUUUG ACU   miRNA  3'        C              A 5'  target: AT2G29060.1  miRNA: ath-miR861-3p miRNA: ath-miR861-3p mfe: -27.3 kcal/mol  p-value: 0.012536  position:  1417  target 5' U G           G       U 3'             U CUUGGAGACGU GUUCAUC              A GAACUUCUGUA UAGGUAG   miRNA  3' C G                     5'
Ortholog Group
Ortholog Groups: OG5_136638	Accession Taxon NP_172232 Arabidopsis thaliana NP_172233 Arabidopsis thaliana NP_180470 ( AT2G29060 ) Arabidopsis thaliana NP_181301 Arabidopsis thaliana NP_001044771 Oryza sativa Japonica Group NP_001050952 Oryza sativa Japonica Group NP_001067095 Oryza sativa Japonica Group e_gw1.181.25.1 Physcomitrella patens subsp. patens e_gw1.213.79.1 Physcomitrella patens subsp. patens e_gw1.359.29.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3590028 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_840044 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_200045 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_98000013 Physcomitrella patens subsp. patens 27568.m000253 Ricinus communis 28650.m000186 Ricinus communis 28650.m000187 Ricinus communis 28650.m000189 Ricinus communis 28650.m000190 Ricinus communis 28650.m000191 Ricinus communis 29767.m000200 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31636 4.2E-190 4 696 No hit NA ProSiteProfiles PS50985 64.7 292 671 IPR005202 Transcription factor GRAS Pfam PF03514 2.7E-108 318 691 IPR005202 Transcription factor GRAS ProSiteProfiles PS50985 60.8 929 1313 IPR005202 Transcription factor GRAS Pfam PF03514 3.5E-104 956 1333 IPR005202 Transcription factor GRAS
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787