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| Locus name | AT2G43500 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | RWP-RK domain-containing protein low similarity to nodule inception protein [Lotus |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G43500.1 | Genomic | mRNA | CDS | Protein
AT2G43500.2 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G43500.1
miRNA: ath-miR172a
miRNA: ath-miR172a
mfe: -27.8 kcal/mol
p-value: 0.013976
position: 2620
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U A 5'
target: AT2G43500.1
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -27.8 kcal/mol
p-value: 0.013370
position: 2620
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U A 5'
target: AT2G43500.1
miRNA: ath-miR172c
miRNA: ath-miR172c
mfe: -27.5 kcal/mol
p-value: 0.016576
position: 2621
target 5' A A 3'
UGCAGCA UAUCA GAUUC
ACGUCGU GUAGU CUAAG
miRNA 3' G A U A 5'
target: AT2G43500.1
miRNA: ath-miR172d
miRNA: ath-miR172d
mfe: -27.5 kcal/mol
p-value: 0.017305
position: 2621
target 5' A A 3'
UGCAGCA UAUCA GAUUC
ACGUCGU GUAGU CUAAG
miRNA 3' G A U A 5'
target: AT2G43500.1
miRNA: ath-miR172e
miRNA: ath-miR172e
mfe: -27.6 kcal/mol
p-value: 0.016048
position: 2620
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U G 5'
target: AT2G43500.2
miRNA: ath-miR172a
miRNA: ath-miR172a
mfe: -27.8 kcal/mol
p-value: 0.013996
position: 2624
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U A 5'
target: AT2G43500.2
miRNA: ath-miR172b
miRNA: ath-miR172b
mfe: -27.8 kcal/mol
p-value: 0.013387
position: 2624
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U A 5'
target: AT2G43500.2
miRNA: ath-miR172c
miRNA: ath-miR172c
mfe: -27.5 kcal/mol
p-value: 0.016600
position: 2625
target 5' A A 3'
UGCAGCA UAUCA GAUUC
ACGUCGU GUAGU CUAAG
miRNA 3' G A U A 5'
target: AT2G43500.2
miRNA: ath-miR172d
miRNA: ath-miR172d
mfe: -27.5 kcal/mol
p-value: 0.017328
position: 2625
target 5' A A 3'
UGCAGCA UAUCA GAUUC
ACGUCGU GUAGU CUAAG
miRNA 3' G A U A 5'
target: AT2G43500.2
miRNA: ath-miR172e
miRNA: ath-miR172e
mfe: -27.6 kcal/mol
p-value: 0.016071
position: 2624
target 5' C A 3'
AUGCAGCA UAUCA GAUUC
UACGUCGU GUAGU CUAAG
miRNA 3' A U G 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_164232 | |
| Cross Link | |
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