Basic information
Locus name	AT1G29400
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	RNA recognition motif (RRM)-containing protein similar to GI:6650523 from [Arabidopsis thaliana]
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function nucleic acid binding
Sequence	AT1G29400.1 | Genomic | mRNA | CDS | Protein AT1G29400.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G29400.1  miRNA: ath-miR838 miRNA: ath-miR838 mfe: -26.2 kcal/mol  p-value: 0.013941  position:  2274  target 5' A    G               U 3'             UG G AAGAAGUGGGAGAAG              AC C UUCUUCAUCUUCUUU   miRNA  3'    A G               U 5'  target: AT1G29400.2  miRNA: ath-miR838 miRNA: ath-miR838 mfe: -26.2 kcal/mol  p-value: 0.014767  position:  2423  target 5' A    G               U 3'             UG G AAGAAGUGGGAGAAG              AC C UUCUUCAUCUUCUUU   miRNA  3'    A G               U 5'
Ortholog Group
Ortholog Groups: OG5_131900	Accession Taxon NP_001032122 Arabidopsis thaliana NP_001078043 Arabidopsis thaliana NP_001119005 Arabidopsis thaliana NP_174233 Arabidopsis thaliana NP_193546 Arabidopsis thaliana NP_196346 Arabidopsis thaliana NP_565990 Arabidopsis thaliana NP_568946 Arabidopsis thaliana NP_849727 ( AT1G29400 ) Arabidopsis thaliana NP_973674 Arabidopsis thaliana 152680 Chlamydomonas reinhardtii NP_001046679 Oryza sativa Japonica Group NP_001047946 Oryza sativa Japonica Group NP_001054388 Oryza sativa Japonica Group e_gw1.271.39.1 Physcomitrella patens subsp. patens e_gw1.78.82.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_780034 Physcomitrella patens subsp. patens 28350.m000106 Ricinus communis 29693.m002077 Ricinus communis 30128.m008555 Ricinus communis 30147.m014409 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24011 6.4E-172 20 605 No hit NA SUPERFAMILY SSF54928 9.5E-33 165 328 No hit NA ProSiteProfiles PS50102 14.1 168 241 IPR000504 RNA recognition motif domain SMART SM00360 6.6E-11 169 237 IPR000504 RNA recognition motif domain Pfam PF00076 1.9E-10 170 234 IPR000504 RNA recognition motif domain ProSiteProfiles PS50102 13.9 253 326 IPR000504 RNA recognition motif domain SMART SM00360 2.3E-13 254 322 IPR000504 RNA recognition motif domain Pfam PF00076 5.5E-10 255 320 IPR000504 RNA recognition motif domain Pfam PF04059 1.8E-54 652 748 IPR007201 RNA recognition motif 2 SMART SM00360 0.3 654 730 IPR000504 RNA recognition motif domain SUPERFAMILY SSF54928 5.9E-15 654 738 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787