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| Locus name | AT2G42890 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Others |
| Effect for Senescence | unclear |
| Gene Description | RNA recognition motif (RRM)-containing protein |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT2G42890.1 | Genomic | mRNA | CDS | Protein
AT2G42890.2 | Genomic | mRNA | CDS | Protein
AT2G42890.3 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT2G42890.1
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -21.4 kcal/mol
p-value: 0.219507
position: 2544
target 5' A A G C 3'
GAG AUCC AGGAAA UCUG
UUC UAGG UCUUUU AGAU
miRNA 3' A A G U 5'
target: AT2G42890.1
miRNA: ath-miR862-3p
miRNA: ath-miR862-3p
mfe: -27.5 kcal/mol
p-value: 0.013603
position: 391
target 5' U C U 3'
CUUCAAGU GAUCU AGCAUGU
GAAGUUCA CUAGG UCGUAUA
miRNA 3' U 5'
target: AT2G42890.2
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -21.4 kcal/mol
p-value: 0.206851
position: 2348
target 5' A A G C 3'
GAG AUCC AGGAAA UCUG
UUC UAGG UCUUUU AGAU
miRNA 3' A A G U 5'
target: AT2G42890.2
miRNA: ath-miR862-3p
miRNA: ath-miR862-3p
mfe: -27.5 kcal/mol
p-value: 0.012436
position: 195
target 5' U C U 3'
CUUCAAGU GAUCU AGCAUGU
GAAGUUCA CUAGG UCGUAUA
miRNA 3' U 5'
target: AT2G42890.3
miRNA: ath-miR781
miRNA: ath-miR781
mfe: -21.4 kcal/mol
p-value: 0.210687
position: 2413
target 5' A A G C 3'
GAG AUCC AGGAAA UCUG
UUC UAGG UCUUUU AGAU
miRNA 3' A A G U 5'
target: AT2G42890.3
miRNA: ath-miR862-3p
miRNA: ath-miR862-3p
mfe: -27.5 kcal/mol
p-value: 0.012785
position: 260
target 5' U C U 3'
CUUCAAGU GAUCU AGCAUGU
GAAGUUCA CUAGG UCGUAUA
miRNA 3' U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_131900 | |
| Cross Link | |
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