Basic information
Locus name	AT1G02220
Alias	ANAC003
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:NAC
Effect for Senescence	unclear
Gene Description	no apical meristem (NAM) family protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding
Sequence	AT1G02220.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT1G02220.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -31.7 kcal/mol  p-value: 0.000194  position:  725  target 5' A    U    A             U 3'             UGGC GAUG AUGAUGAGGAUGA              ACUG CUAC UACUACUUCUACU   miRNA  3'                           5'  target: AT1G02220.1  miRNA: ath-miR778 miRNA: ath-miR778 mfe: -28.1 kcal/mol  p-value: 0.001901  position:  1148  target 5' U    A               A 3'             GGUG GCAUAAAUUGGGUCA              CCAC UGUAUUUGGUUCGGU   miRNA  3' G    A                 5'  target: AT1G02220.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -25.1 kcal/mol  p-value: 0.016962  position:  1123  target 5' A   U    C            G 3'             UGA GAUG ACAAGGGACUGA              ACU UUGC UGUUCUUUGACU   miRNA  3'          U            A 5'
Ortholog Group
Ortholog Groups: OG5_164299	Accession Taxon NP_001078103 Arabidopsis thaliana NP_171609 Arabidopsis thaliana NP_171725 ( AT1G02220 ) Arabidopsis thaliana NP_171726 Arabidopsis thaliana NP_171727 Arabidopsis thaliana NP_566226 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF101941 1.1E-42 2 146 IPR003441 No apical meristem (NAM) protein ProSiteProfiles PS51005 40.3 3 147 IPR003441 No apical meristem (NAM) protein PANTHER PTHR31989 3.3E-27 4 128 No hit NA Pfam PF02365 1.1E-35 4 128 IPR003441 No apical meristem (NAM) protein
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787