Basic information
Locus name	AT1G48000
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:MYB
Effect for Senescence	unclear
Gene Description	myb family transcription factor
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function chromatin binding
Sequence	AT1G48000.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Cross Link
Database Entry ID E-value Start End InterPro ID Description Coils Coil NA 14 35 No hit NA ProSiteProfiles PS51294 23.5 29 85 IPR017930 Myb domain PANTHER PTHR10641 1.5E-79 31 201 No hit NA SUPERFAMILY SSF46689 1.5E-30 32 128 IPR009057 Homeodomain-like SMART SM00717 2.1E-15 33 83 IPR001005 SANT/Myb domain Pfam PF00249 7.0E-16 34 81 IPR001005 SANT/Myb domain ProSiteProfiles PS51294 16.1 86 136 IPR017930 Myb domain SMART SM00717 8.1E-13 86 134 IPR001005 SANT/Myb domain Pfam PF00249 4.7E-12 87 130 IPR001005 SANT/Myb domain