Basic information
Locus name	AT2G47190
Alias	ATMYB2/MYB2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:MYB
Effect for Senescence	promote
Gene Description	myb family transcription factor (MYB2)
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85 2: Guo Y, Gan S AtMYB2 regulates whole plant senescence by inhibiting cytokinin-mediated branching at late stages of development in Arabidopsis. Plant Physiol. 2011 Jul;156(3):1612-9
Gene Ontology	molecular function chromatin binding
Sequence	AT2G47190.1 | Genomic | mRNA | CDS | Protein
Mutant information
Mutated 1 Mutant name atmyb2-1 Mutant/Transgenic mutant Ecotype Ws Mutagenesis type T-DNA insertion_knock out
Mutated 2 Mutant name atmyb2-2 Mutant/Transgenic mutant Ecotype Ws Mutagenesis type T-DNA insertion_knock out
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G47190.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -28.3 kcal/mol  p-value: 0.011663  position:  31  target 5' U              U   U  C 3'             UCUUUCUCUCUAUC CUU UC              AGGAGGAGGGAUAG GAG AG   miRNA  3' G                  U    5'  target: AT2G47190.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -28.3 kcal/mol  p-value: 0.013064  position:  31  target 5' U              U   U  C 3'             UCUUUCUCUCUAUC CUU UC              AGGAGGAGGGAUAG GAG AG   miRNA  3' G                  U    5'  target: AT2G47190.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -28.3 kcal/mol  p-value: 0.011575  position:  31  target 5' U              U   U  C 3'             UCUUUCUCUCUAUC CUU UC              AGGAGGAGGGAUAG GAG AG   miRNA  3' G                  U    5'  target: AT2G47190.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -28.3 kcal/mol  p-value: 0.012348  position:  31  target 5' U              U   U  C 3'             UCUUUCUCUCUAUC CUU UC              AGGAGGAGGGAUAG GAG AG   miRNA  3' G                  U    5'  target: AT2G47190.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -28.3 kcal/mol  p-value: 0.013493  position:  31  target 5' U              U   U  C 3'             UCUUUCUCUCUAUC CUU UC              AGGAGGAGGGAUAG GAG AG   miRNA  3' G                  U    5'
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10641 2.3E-77 16 241 No hit NA ProSiteProfiles PS51294 26.0 17 73 IPR017930 Myb domain SUPERFAMILY SSF46689 1.1E-30 19 116 IPR009057 Homeodomain-like SMART SM00717 5.1E-16 21 71 IPR001005 SANT/Myb domain Pfam PF00249 2.9E-16 22 69 IPR001005 SANT/Myb domain ProSiteProfiles PS51294 18.1 74 124 IPR017930 Myb domain SMART SM00717 1.1E-13 74 122 IPR001005 SANT/Myb domain Pfam PF00249 2.1E-12 75 118 IPR001005 SANT/Myb domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787