Basic information
Locus name	AT2G35940
Alias	BLH1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:HB
Effect for Senescence	unclear
Gene Description	homeodomain-containing protein contains 'Homeobox' domain signature
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding sequence-specific DNA binding transcription factor activity sequence-specific DNA binding
Sequence	AT2G35940.1 | Genomic | mRNA | CDS | Protein AT2G35940.2 | Genomic | mRNA | CDS | Protein AT2G35940.3 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G35940.3  miRNA: ath-miR823 miRNA: ath-miR823 mfe: -25.1 kcal/mol  p-value: 0.046446  position:  325  target 5' U    G          G    U 3'             UCUU AUGUGAUCAC AUUC              AGAA UAUACUAGUG UGGG   miRNA  3' U               G    U 5'
Ortholog Group
Ortholog Groups: OG5_150207	Accession Taxon NP_001031490 ( AT2G35940 ) Arabidopsis thaliana NP_181138 Arabidopsis thaliana NP_850256 Arabidopsis thaliana CMR176C Cyanidioschyzon merolae strain 10D NP_001049067 Oryza sativa Japonica Group fgenesh1_pg.C_Chr_17.0001000037 Ostreococcus tauri fgenesh1_pg.scaffold_220000039 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_258000001 Physcomitrella patens subsp. patens 29333.m001039 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00574 1.3E-86 184 333 IPR006563 POX Pfam PF07526 1.2E-48 190 332 IPR006563 POX PANTHER PTHR11850 1.5E-194 236 676 No hit NA Coils Coil NA 265 293 No hit NA ProSiteProfiles PS50071 12.3 383 446 IPR001356 Homeodomain SMART SM00389 2.3E-9 386 450 IPR001356 Homeodomain SUPERFAMILY SSF46689 5.6E-17 387 453 IPR009057 Homeodomain-like Pfam PF05920 6.3E-17 403 442 IPR008422 Homeobox KN domain
Subcellular Localization
Localization 1 Localization cytosol,nucleus Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization nucleus Evidence SUBAcon Pubmed ID 23180787