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| Locus name | AT3G01470 |
| Alias | HAT5 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Transcription regulation:HB |
| Effect for Senescence | unclear |
| Gene Description | homeobox-leucine zipper protein 5 (HAT5) |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT3G01470.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT3G01470.1
miRNA: ath-miR396b
miRNA: ath-miR396b
mfe: -23.9 kcal/mol
p-value: 0.032956
position: 968
target 5' U U G 3'
AAGUUC AGGGAGC GU GGGA
UUCAAG UCUUUCG CA CCUU
miRNA 3' U A 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_133011 | |
| Cross Link | |
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| Localization | nucleus |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
