Basic information   
Locus name AT5G25220
AliasKNAT3
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation:HB
Effect for Senescenceunclear
Gene Descriptionhomeobox protein knotted-1 like 3 (KNAT3)
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
cellular component
molecular function
SequenceAT5G25220.1 | Genomic | mRNA | CDS | Protein
AT5G25220.2 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_146601
AccessionTaxon
NP_001031938Arabidopsis thaliana
NP_196667Arabidopsis thaliana
NP_197904 ( AT5G25220 ) Arabidopsis thaliana
118176Chlamydomonas reinhardtii
NP_001051407Oryza sativa Japonica Group
NP_001058200Oryza sativa Japonica Group
e_gw1.77.85.1Physcomitrella patens subsp. patens
fgenesh1_pm.scaffold_154000010Physcomitrella patens subsp. patens
29737.m001270Ricinus communis
29848.m004577Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF037909.3E-18159200IPR005540KNOX1
PANTHERPTHR118505.8E-84160403No hitNA
PfamPF037918.6E-23216268IPR005541KNOX2
PfamPF037896.4E-7322343IPR005539ELK
ProSiteProfilesPS5121310.0322342IPR005539ELK
ProSiteProfilesPS5007111.7342405IPR001356Homeodomain
SMARTSM003892.4E-11344409IPR001356Homeodomain
SUPERFAMILYSSF466895.1E-16344408IPR009057Homeodomain-like
PfamPF059202.9E-16362401IPR008422Homeobox KN domain
Subcellular Localization   
Localizationnucleus
EvidenceSUBAcon
Pubmed ID23180787