Basic information
Locus name	AT2G21060
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	cold-shock DNA-binding family protein / glycine-rich protein (GRP2) identical to Glycine-
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process regulation of transcription, DNA-dependent molecular function DNA binding
Sequence	AT2G21060.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G21060.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -25.2 kcal/mol  p-value: 0.003195  position:  367  target 5' U      C       G    G  G 3'             UGGCGG GGUGGUG AAGA GA              ACUGCU CUACUAC UUCU CU   miRNA  3'        A            A    5'  target: AT2G21060.1  miRNA: ath-miR838 miRNA: ath-miR838 mfe: -22.4 kcal/mol  p-value: 0.022895  position:  447  target 5' C   G         U  U  U 3'             GUG AGGAGGUGG GG GA              CAC UUCUUCAUC UC UU   miRNA  3' A   G         U  U  U 5'
Ortholog Group
Ortholog Groups: OG5_126866	Accession Taxon NP_179702 ( AT2G21060 ) Arabidopsis thaliana NP_195580 Arabidopsis thaliana 126810 Chlamydomonas reinhardtii ACO61542 Micromonas sp. RCC299 0600010330 Ostreococcus tauri 0800010082 Ostreococcus tauri estExt_gwp_gw1.C_410063 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_640002 Physcomitrella patens subsp. patens gw1.103.78.1 Physcomitrella patens subsp. patens 27472.m000302 Ricinus communis 29908.m006148 Ricinus communis 31478.m000031 Ricinus communis estExt_gwp_gw1.C_chr_40158 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_5000053 Thalassiosira pseudonana CCMP1335 XP_002946304 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF50249 1.0E-19 14 79 IPR012340 Nucleic acid-binding, OB-fold Pfam PF00313 4.4E-26 16 80 IPR002059 Cold-shock protein, DNA-binding SMART SM00357 2.7E-23 16 81 IPR011129 Cold shock protein PRINTS PR00050 6.5E-13 17 32 IPR002059 Cold-shock protein, DNA-binding ProSitePatterns PS00352 NA 28 47 IPR019844 Cold-shock conserved site PRINTS PR00050 6.5E-13 38 47 IPR002059 Cold-shock protein, DNA-binding PRINTS PR00050 6.5E-13 53 71 IPR002059 Cold-shock protein, DNA-binding PANTHER PTHR23002 1.2E-31 117 199 No hit NA SUPERFAMILY SSF57756 2.3E-7 119 156 IPR001878 Zinc finger, CCHC-type Pfam PF00098 9.6E-8 137 152 IPR001878 Zinc finger, CCHC-type SMART SM00343 2.6E-5 137 153 IPR001878 Zinc finger, CCHC-type ProSiteProfiles PS50158 11.1 138 153 IPR001878 Zinc finger, CCHC-type SUPERFAMILY SSF57756 4.3E-7 163 196 IPR001878 Zinc finger, CCHC-type SMART SM00343 3.4E-5 181 197 IPR001878 Zinc finger, CCHC-type Pfam PF00098 8.5E-8 182 197 IPR001878 Zinc finger, CCHC-type ProSiteProfiles PS50158 10.9 182 197 IPR001878 Zinc finger, CCHC-type