Leaf Senescence DataBase

Basic information

Locus name

AT5G06510

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation:CCAAT

Effect for Senescence

unclear

Gene Description

CCAAT-binding transcription factor (CBF-B/NF-YA) family protein

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	regulation of transcription, DNA-dependent
molecular function	DNA binding sequence-specific DNA binding transcription factor activity

Sequence

Microarray

Sampling

Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)

Comparation

Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.

miRNA Interaction

Details

target: AT5G06510.1
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -37.5 kcal/mol
p-value: 0.000125

position:  1068
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.1
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -37.5 kcal/mol
p-value: 0.000052

position:  1068
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.1
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -37.5 kcal/mol
p-value: 0.000053

position:  1068
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.1
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -37.5 kcal/mol
p-value: 0.000068

position:  1068
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.1
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -35.5 kcal/mol
p-value: 0.000559

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -35.5 kcal/mol
p-value: 0.000252

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -35.5 kcal/mol
p-value: 0.000366

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -35.5 kcal/mol
p-value: 0.000356

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -35.5 kcal/mol
p-value: 0.000382

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -35.5 kcal/mol
p-value: 0.000157

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.1
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -35.5 kcal/mol
p-value: 0.000301

position:  1066
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -37.5 kcal/mol
p-value: 0.000161

position:  1306
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.2
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -37.5 kcal/mol
p-value: 0.000069

position:  1306
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.2
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -37.5 kcal/mol
p-value: 0.000071

position:  1306
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.2
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -37.5 kcal/mol
p-value: 0.000090

position:  1306
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.2
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -35.5 kcal/mol
p-value: 0.000688

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -35.5 kcal/mol
p-value: 0.000323

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -35.5 kcal/mol
p-value: 0.000460

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -35.5 kcal/mol
p-value: 0.000448

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -35.5 kcal/mol
p-value: 0.000483

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -35.5 kcal/mol
p-value: 0.000204

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.2
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -35.5 kcal/mol
p-value: 0.000381

position:  1304
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -37.5 kcal/mol
p-value: 0.000130

position:  1229
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.3
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -37.5 kcal/mol
p-value: 0.000055

position:  1229
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.3
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -37.5 kcal/mol
p-value: 0.000056

position:  1229
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.3
miRNA: ath-miR169g
miRNA: ath-miR169g
mfe: -37.5 kcal/mol
p-value: 0.000071

position:  1229
target 5' A     A              U 3'
           GGCAA UCAUCUUUGGCUCA
           CCGUU AGUAGGAACCGAGU
miRNA  3' G     C                5'

target: AT5G06510.3
miRNA: ath-miR169h
miRNA: ath-miR169h
mfe: -35.5 kcal/mol
p-value: 0.000580

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169i
miRNA: ath-miR169i
mfe: -35.5 kcal/mol
p-value: 0.000263

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169j
miRNA: ath-miR169j
mfe: -35.5 kcal/mol
p-value: 0.000381

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169k
miRNA: ath-miR169k
mfe: -35.5 kcal/mol
p-value: 0.000370

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169l
miRNA: ath-miR169l
mfe: -35.5 kcal/mol
p-value: 0.000398

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169m
miRNA: ath-miR169m
mfe: -35.5 kcal/mol
p-value: 0.000164

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

target: AT5G06510.3
miRNA: ath-miR169n
miRNA: ath-miR169n
mfe: -35.5 kcal/mol
p-value: 0.000313

position:  1227
target 5' A       A            C 3'
           CAGGCAA UCAUCUUUGGCU
           GUCCGUU AGUAGGAACCGA
miRNA  3'         C            U 5'

Ortholog Group

Ortholog Groups: OG5_156221

Accession	Taxon
NP_187220	Arabidopsis thaliana
NP_196269	Arabidopsis thaliana
NP_974741 ( AT5G06510 )	Arabidopsis thaliana
NP_974742	Arabidopsis thaliana
NP_001050774	Oryza sativa Japonica Group
NP_001058929	Oryza sativa Japonica Group
NP_001067293	Oryza sativa Japonica Group
29333.m001059	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR12632	3.6E-64	67	269	IPR001289	CCAAT-binding transcription factor, subunit B
SMART	SM00521	1.6E-30	131	189	IPR001289	CCAAT-binding transcription factor, subunit B
ProSiteProfiles	PS51152	32.0	132	189	IPR001289	CCAAT-binding transcription factor, subunit B
Pfam	PF02045	1.4E-25	134	186	IPR001289	CCAAT-binding transcription factor, subunit B
ProSitePatterns	PS00686	NA	137	157	IPR018362	CCAAT-binding factor, conserved site

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787