|
Locus name | AT2G41060 |
Alias | UBA2b |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Others:defense |
Effect for Senescence | promote |
Gene Description | wound-responsive RNA-binding protein |
Evidence | Genetic evidence:Transgene [Ref 1] |
References | 1: Kim CY, Bove J, Assmann SMOverexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death.New Phytol. 2008;180(1):57-70 |
Gene Ontology | |
Sequence | AT2G41060.1 | Genomic | mRNA | CDS | Protein AT2G41060.2 | Genomic | mRNA | CDS | Protein
|
|
Mutant name |
DEX-UBA2b-OX |
Mutant/Transgenic |
transgenic |
Ecotype |
Col-0 |
Mutagenesis type |
transgene |
miRNA Interaction | |
|
Details | | target: AT2G41060.1 miRNA: ath-miR159a miRNA: ath-miR159a mfe: -30.2 kcal/mol p-value: 0.006073
position: 107 target 5' G A C 3' AGGGCUCUCUUCAA UCAA UCUCGAGGGAAGUU GGUU miRNA 3' A A U 5'
target: AT2G41060.1 miRNA: ath-miR159b miRNA: ath-miR159b mfe: -30.7 kcal/mol p-value: 0.004828
position: 106 target 5' A A C 3' GAGGGCUCUCUUCAA UCAA UUCUCGAGGGAAGUU GGUU miRNA 3' A U 5'
target: AT2G41060.1 miRNA: ath-miR159c miRNA: ath-miR159c mfe: -28.8 kcal/mol p-value: 0.011814
position: 105 target 5' U A A C 3' AG GGGCUCUCUUCAA UCAA UC CUCGAGGGAAGUU GGUU miRNA 3' A U 5'
target: AT2G41060.1 miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -32.6 kcal/mol p-value: 0.003331
position: 420 target 5' U G A 3' UGGAACC UUUUCAAAGGAUC ACCUUGG GAGAGUUUUCUAG miRNA 3' G 5'
target: AT2G41060.2 miRNA: ath-miR2938 miRNA: ath-miR2938 mfe: -32.6 kcal/mol p-value: 0.003164
position: 271 target 5' U G A 3' UGGAACC UUUUCAAAGGAUC ACCUUGG GAGAGUUUUCUAG miRNA 3' G 5'
|
|
Ortholog Group | |
|
Ortholog Groups: OG5_133793 | |
Cross Link | |
|
|