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Locus name | GRMZM2G312877 |
Organism | Maize (Zea mays) | Taxonomic identifier | [NCBI] | Function category | Biodegradation of Xenobiotics.lactoylglutathione lyase | Effect for Senescence | unclear | Gene Description | Expression level was up-regulated at 18 DAA (Day After Anthesis)or later. | Evidence | Genomic evidence:microarray data [Ref 1] | References | 1: Sekhon RS, Childs KL, Santoro N, Foster CE, Buell CR, de Leon N, Kaeppler SMTranscriptional and metabolic analysis of senescence induced by preventing pollination in maize.Plant Physiol. 2012 Aug;159(4):1730-44 | Gene Ontology | | Sequence | GRMZM2G312877_T01 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
| Details | | target: GRMZM2G312877_T01 miRNA: zma-miR408b-5p miRNA: zma-miR408b-5p mfe: -39.9 kcal/mol p-value: 0.000202
position: 381 target 5' A G A 3' CGUGCUC GCUUCGUCCCU GUACGAG CGGAGCAGGGA miRNA 3' G A C 5'
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Cross Link | |
| Database | Entry ID | E-value | Start | End | InterPro ID | Description | PANTHER | PTHR11802 | 3.4E-164 | 88 | 500 | IPR001563 | Peptidase S10, serine carboxypeptidase | Pfam | PF00450 | 2.9E-127 | 100 | 499 | IPR001563 | Peptidase S10, serine carboxypeptidase | SUPERFAMILY | SSF53474 | 3.7E-128 | 100 | 500 | No hit | NA | PRINTS | PR00724 | 6.7E-27 | 168 | 180 | IPR001563 | Peptidase S10, serine carboxypeptidase | PRINTS | PR00724 | 6.7E-27 | 181 | 191 | IPR001563 | Peptidase S10, serine carboxypeptidase | PRINTS | PR00724 | 6.7E-27 | 216 | 241 | IPR001563 | Peptidase S10, serine carboxypeptidase | ProSitePatterns | PS00131 | NA | 230 | 237 | IPR018202 | Peptidase S10, serine carboxypeptidase, active site | PRINTS | PR00724 | 6.7E-27 | 469 | 482 | IPR001563 | Peptidase S10, serine carboxypeptidase | ProSitePatterns | PS00560 | NA | 469 | 486 | IPR018202 | Peptidase S10, serine carboxypeptidase, active site |
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