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| Locus name | GRMZM2G113203 |
| Organism | Maize (Zea mays) | | Taxonomic identifier | [NCBI] | | Function category | transport.ABC transporters and multidrug resistance systems | | Effect for Senescence | unclear | | Gene Description | Expression level was up-regulated at 18 DAA (Day After Anthesis)or later. | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Sekhon RS, Childs KL, Santoro N, Foster CE, Buell CR, de Leon N, Kaeppler SMTranscriptional and metabolic analysis of senescence induced by preventing pollination in maize.Plant Physiol. 2012 Aug;159(4):1730-44 | | Gene Ontology | | | Pathway | | | Sequence | GRMZM2G113203_T01 | Genomic | mRNA | CDS | Protein
GRMZM2G113203_T02 | Genomic | mRNA | CDS | Protein
GRMZM2G113203_T03 | Genomic | mRNA | CDS | Protein
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miRNA Interaction  | |
| | Details | | target: GRMZM2G113203_T01
miRNA: zma-miR167a-5p
miRNA: zma-miR167a-5p
mfe: -33.8 kcal/mol
p-value: 0.005582
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167b-5p
miRNA: zma-miR167b-5p
mfe: -33.8 kcal/mol
p-value: 0.006759
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167c-5p
miRNA: zma-miR167c-5p
mfe: -33.8 kcal/mol
p-value: 0.004843
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167d-5p
miRNA: zma-miR167d-5p
mfe: -33.8 kcal/mol
p-value: 0.004261
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167e-5p
miRNA: zma-miR167e-5p
mfe: -33.6 kcal/mol
p-value: 0.005388
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167f-5p
miRNA: zma-miR167f-5p
mfe: -33.6 kcal/mol
p-value: 0.004771
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167g-5p
miRNA: zma-miR167g-5p
mfe: -33.6 kcal/mol
p-value: 0.006909
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167h-5p
miRNA: zma-miR167h-5p
mfe: -33.6 kcal/mol
p-value: 0.006125
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167i-5p
miRNA: zma-miR167i-5p
mfe: -33.6 kcal/mol
p-value: 0.006767
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T01
miRNA: zma-miR167j-5p
miRNA: zma-miR167j-5p
mfe: -33.6 kcal/mol
p-value: 0.004619
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167a-5p
miRNA: zma-miR167a-5p
mfe: -33.8 kcal/mol
p-value: 0.005768
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167b-5p
miRNA: zma-miR167b-5p
mfe: -33.8 kcal/mol
p-value: 0.006975
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167c-5p
miRNA: zma-miR167c-5p
mfe: -33.8 kcal/mol
p-value: 0.005015
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167d-5p
miRNA: zma-miR167d-5p
mfe: -33.8 kcal/mol
p-value: 0.004421
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167e-5p
miRNA: zma-miR167e-5p
mfe: -33.6 kcal/mol
p-value: 0.005588
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167f-5p
miRNA: zma-miR167f-5p
mfe: -33.6 kcal/mol
p-value: 0.004955
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167g-5p
miRNA: zma-miR167g-5p
mfe: -33.6 kcal/mol
p-value: 0.007129
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167h-5p
miRNA: zma-miR167h-5p
mfe: -33.6 kcal/mol
p-value: 0.006326
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167i-5p
miRNA: zma-miR167i-5p
mfe: -33.6 kcal/mol
p-value: 0.006990
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T02
miRNA: zma-miR167j-5p
miRNA: zma-miR167j-5p
mfe: -33.6 kcal/mol
p-value: 0.004798
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167a-5p
miRNA: zma-miR167a-5p
mfe: -33.8 kcal/mol
p-value: 0.005599
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167b-5p
miRNA: zma-miR167b-5p
mfe: -33.8 kcal/mol
p-value: 0.006779
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167c-5p
miRNA: zma-miR167c-5p
mfe: -33.8 kcal/mol
p-value: 0.004859
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167d-5p
miRNA: zma-miR167d-5p
mfe: -33.8 kcal/mol
p-value: 0.004276
position: 534
target 5' C C C C 3'
UGGAUCG GCUGGCGGC UCG
AUCUAGU CGACCGUCG AGU
miRNA 3' A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167e-5p
miRNA: zma-miR167e-5p
mfe: -33.6 kcal/mol
p-value: 0.005407
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167f-5p
miRNA: zma-miR167f-5p
mfe: -33.6 kcal/mol
p-value: 0.004787
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167g-5p
miRNA: zma-miR167g-5p
mfe: -33.6 kcal/mol
p-value: 0.006929
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167h-5p
miRNA: zma-miR167h-5p
mfe: -33.6 kcal/mol
p-value: 0.006143
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167i-5p
miRNA: zma-miR167i-5p
mfe: -33.6 kcal/mol
p-value: 0.006788
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
target: GRMZM2G113203_T03
miRNA: zma-miR167j-5p
miRNA: zma-miR167j-5p
mfe: -33.6 kcal/mol
p-value: 0.004635
position: 535
target 5' U C C C 3'
GGAUCG GCUGGCGGC UCG
UCUAGU CGACCGUCG AGU
miRNA 3' G A A 5'
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| Cross Link | |
| | Database | Entry ID | E-value | Start | End | InterPro ID | Description | | PANTHER | PTHR10572 | 1.1E-169 | 1 | 233 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | Pfam | PF00368 | 3.6E-100 | 1 | 226 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | ProSiteProfiles | PS50065 | 80.0 | 1 | 226 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | ProSitePatterns | PS00066 | NA | 2 | 16 | IPR023076 | Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site | | SUPERFAMILY | SSF56542 | 3.5E-63 | 7 | 25 | IPR009029 | Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding | | PRINTS | PR00071 | 1.1E-42 | 40 | 65 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | SUPERFAMILY | SSF56542 | 3.5E-63 | 57 | 216 | IPR009029 | Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding | | PRINTS | PR00071 | 1.1E-42 | 91 | 117 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | PRINTS | PR00071 | 1.1E-42 | 145 | 166 | IPR002202 | Hydroxymethylglutaryl-CoA reductase, class I/II | | ProSitePatterns | PS00318 | NA | 157 | 164 | IPR023076 | Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site |
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