Basic information
Locus name	AT5G08290
Alias	YLS8
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:BR
Effect for Senescence	Unclear
Gene Description	Encodes Dim1 homolog. DIM1(AT3G19820.1):Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol.
Evidence	Molecular evidence:DDRT-PCR [Ref 1]
References	1: Yoshida S, Ito M, Nishida I, Watanabe A Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Plant Cell Physiol. 2001 Feb;42(2):170-8
Gene Ontology	biological process mitosis cellular component spliceosomal complex
Sequence	AT5G08290.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128171	Accession Taxon NP_196446 ( AT5G08290 ) Arabidopsis thaliana CMN033C Cyanidioschyzon merolae strain 10D CMS018C Cyanidioschyzon merolae strain 10D 59574 Chlamydomonas reinhardtii ACO68790 Micromonas sp. RCC299 NP_001064903 Oryza sativa Japonica Group e_gw1.12.00.303.1 Ostreococcus tauri estExt_Genewise1.C_1410065 Physcomitrella patens subsp. patens 29691.m000279 Ricinus communis e_gw1.14.265.1 Thalassiosira pseudonana CCMP1335 XP_002948591 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF017199 3.7E-103 1 142 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP PANTHER PTHR12052 7.4E-117 2 142 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP Pfam PF02966 3.0E-68 4 136 IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP SUPERFAMILY SSF52833 1.0E-35 4 137 IPR012336 Thioredoxin-like fold
Subcellular Localization
Localization 1 Localization nucleus Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytoplasm and nucleus Evidence Localization with GFP-ORF fusion protein (GFP:cDNA) Pubmed ID 15610358
Localization 3 Localization cytosol,nucleus Evidence SUBAcon Pubmed ID 23180787