Basic information
Locus name	LOC_Os03g11440
Organism	Rice (Oryza sativa)
Taxonomic identifier	[NCBI]
Function category	Others:Protein biosynthesis
Effect for Senescence	Unclear
Gene Description	Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
Evidence	Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1]
References	1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin Y Identification of early senescence-associated genes in rice flag leaves. Plant Mol. Biol. 2008 May;67(1-2):37-55
Gene Ontology	biological process protein transport cellular component membrane
Pathway	Reactome REACT_15380
Sequence	LOC_Os03g11440.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: LOC_Os03g11440  miRNA: osa-miR156k miRNA: osa-miR156k mfe: -29.3 kcal/mol  p-value: 0.003501  position:  30  target 5' C             C   C    C 3'             GU CUCUCUCUCU UCU GUCG              CA GAGAGAGAGA AGA CAGU   miRNA  3' A  C                     5'  target: LOC_Os03g11440  miRNA: osa-miR167a miRNA: osa-miR167a mfe: -26.8 kcal/mol  p-value: 0.046852  position:  149  target 5' A                    G 3'             AGAU G GCUGGUGGCUUUA              UCUA U CGACCGUCGAAGU   miRNA  3' A    G A               5'  target: LOC_Os03g11440  miRNA: osa-miR167b miRNA: osa-miR167b mfe: -26.8 kcal/mol  p-value: 0.046577  position:  149  target 5' A                    G 3'             AGAU G GCUGGUGGCUUUA              UCUA U CGACCGUCGAAGU   miRNA  3' A    G A               5'  target: LOC_Os03g11440  miRNA: osa-miR167c miRNA: osa-miR167c mfe: -26.8 kcal/mol  p-value: 0.046414  position:  149  target 5' A                    G 3'             AGAU G GCUGGUGGCUUUA              UCUA U CGACCGUCGAAGU   miRNA  3' A    G A               5'  target: LOC_Os03g11440  miRNA: osa-miR2098-3p miRNA: osa-miR2098-3p mfe: -26.8 kcal/mol  p-value: 0.030601  position:  1622  target 5' C   G G         C     U 3'             GCA U CUGCUUGGC GGCUG              CGU A GGCGAACUG UUGGC   miRNA  3'     G           U       5'  target: LOC_Os03g11440  miRNA: osa-miR809a miRNA: osa-miR809a mfe: -24.8 kcal/mol  p-value: 0.003379  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809b miRNA: osa-miR809b mfe: -24.8 kcal/mol  p-value: 0.004263  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809c miRNA: osa-miR809c mfe: -24.8 kcal/mol  p-value: 0.003032  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809d miRNA: osa-miR809d mfe: -24.8 kcal/mol  p-value: 0.003698  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809e miRNA: osa-miR809e mfe: -24.8 kcal/mol  p-value: 0.003628  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809f miRNA: osa-miR809f mfe: -24.8 kcal/mol  p-value: 0.002890  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809g miRNA: osa-miR809g mfe: -24.8 kcal/mol  p-value: 0.003801  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'  target: LOC_Os03g11440  miRNA: osa-miR809h miRNA: osa-miR809h mfe: -24.8 kcal/mol  p-value: 0.002547  position:  686  target 5' G               U      U 3'             GUUCUGGCAUUUCUC C UUUA              UAAGAUUGUAAAGAG G AAGU   miRNA  3'                 U U      5'
Ortholog Group
Ortholog Groups: OG5_127102	Accession Taxon NP_001031476 Arabidopsis thaliana NP_174225 Arabidopsis thaliana NP_177993 Arabidopsis thaliana NP_180972 Arabidopsis thaliana CMK192C Cyanidioschyzon merolae strain 10D 188207 Chlamydomonas reinhardtii ACO66244 Micromonas sp. RCC299 NP_001049359 ( LOC_Os03g11440 ) Oryza sativa Japonica Group NP_001062944 Oryza sativa Japonica Group NP_001062945 Oryza sativa Japonica Group e_gw1.15.00.104.1 Ostreococcus tauri estExt_Genewise1.C_1140040 Physcomitrella patens subsp. patens estExt_Genewise1.C_3230026 Physcomitrella patens subsp. patens 30026.m001474 Ricinus communis estExt_Genewise1.C_chr_60537 Thalassiosira pseudonana CCMP1335 estExt_fgenesh1_pg.C_chr_180107 Thalassiosira pseudonana CCMP1335 XP_002946971 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10906 1.9E-303 4 475 IPR002208 SecY/SEC61-alpha family PIRSF PIRSF004557 8.1E-124 8 472 IPR002208 SecY/SEC61-alpha family SUPERFAMILY SSF103491 2.0E-123 10 465 IPR023201 SecY subunit domain TIGRFAM TIGR00967 5.1E-108 31 466 IPR002208 SecY/SEC61-alpha family Pfam PF10559 2.2E-19 42 76 IPR019561 Translocon Sec61/SecY, plug domain Pfam PF00344 1.7E-95 77 460 IPR002208 SecY/SEC61-alpha family ProSitePatterns PS00755 NA 77 96 IPR002208 SecY/SEC61-alpha family