Basic information
Locus name	AT2G42790
Alias	CS
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	Unclear
Gene Description	citrate synthase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Taylor L, Nunes-Nesi A, Parsley K, Leiss A, Leach G, Coates S, Wingler A, Fernie AR, Hibberd JM Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. Plant J. 2010 May 1;62(4):641-52
Gene Ontology	biological process cellular carbohydrate metabolic process molecular function transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Pathway	KEGG map00020 (EC 2.3.3.1) map00630 (EC 2.3.3.1) MetaCyc PWY-5750
Sequence	AT2G42790.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT2G42790.1  miRNA: ath-miR159a miRNA: ath-miR159a mfe: -26.2 kcal/mol  p-value: 0.049905  position:  2554  target 5' A   U             G   U 3'             UGG GUUCCUUUUAAUC CAG              AUC CGAGGGAAGUUAG GUU   miRNA  3'     U                 U 5'  target: AT2G42790.1  miRNA: ath-miR159b miRNA: ath-miR159b mfe: -25.2 kcal/mol  p-value: 0.081499  position:  2555  target 5' U  U             G   U 3'             GG GUUCCUUUUAAUC CAG              UC CGAGGGAAGUUAG GUU   miRNA  3' U  U                 U 5'  target: AT2G42790.1  miRNA: ath-miR159c miRNA: ath-miR159c mfe: -27.3 kcal/mol  p-value: 0.042028  position:  2555  target 5' U  U             G   U 3'             GG GUUCCUUUUAAUC CAG              CC CGAGGGAAGUUAG GUU   miRNA  3' U  U                 U 5'
Ortholog Group
Ortholog Groups: OG5_128590	Accession Taxon NP_181807 ( AT2G42790 ) Arabidopsis thaliana NP_191433 Arabidopsis thaliana NP_191434 Arabidopsis thaliana CMA040C Cyanidioschyzon merolae strain 10D CMJ293C Cyanidioschyzon merolae strain 10D 24263 Chlamydomonas reinhardtii ACO63921 Micromonas sp. RCC299 ACO70559 Micromonas sp. RCC299 NP_001046373 Oryza sativa Japonica Group e_gw1.17.00.49.1 Ostreococcus tauri e_gw1.10.51.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_560152 Physcomitrella patens subsp. patens 29176.m000137 Ricinus communis XP_002954665 Volvox carteri f. nagariensis XP_002960009 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11739 3.4E-206 33 507 IPR002020 Citrate synthase-like PIRSF PIRSF001369 2.1E-173 42 480 IPR024176 Citrate synthase, bacterial-type SUPERFAMILY SSF48256 1.7E-143 69 479 IPR016141 Citrate synthase-like, core Pfam PF00285 1.4E-128 93 461 IPR002020 Citrate synthase-like PRINTS PR00143 1.4E-46 219 232 IPR002020 Citrate synthase-like PRINTS PR00143 1.4E-46 273 288 IPR002020 Citrate synthase-like PRINTS PR00143 1.4E-46 295 323 IPR002020 Citrate synthase-like PRINTS PR00143 1.4E-46 348 368 IPR002020 Citrate synthase-like ProSitePatterns PS00480 NA 355 367 IPR019810 Citrate synthase active site PRINTS PR00143 1.4E-46 410 426 IPR002020 Citrate synthase-like PRINTS PR00143 1.4E-46 430 444 IPR002020 Citrate synthase-like
Subcellular Localization
Localization	peroxisome
Evidence	SUBAcon
Pubmed ID	23180787