Leaf Senescence DataBase

Basic information

Locus name

AT1G53310

Alias

PEPC

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Lipid/Carbohydrate metabolism

Effect for Senescence

Unclear

Gene Description

phosphoenolpyruvate carboxylase

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology

biological process	carbon fixation tricarboxylic acid cycle
molecular function	phosphoenolpyruvate carboxylase activity

Pathway

KEGG	map00620 (EC 4.1.1.31) map00680 (EC 4.1.1.31) map00710 (EC 4.1.1.31) map00720 (EC 4.1.1.31)
MetaCyc	PWY-241

Sequence

miRNA Interaction

Details

target: AT1G53310.1
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.7 kcal/mol
p-value: 0.043960

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.7 kcal/mol
p-value: 0.049803

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.7 kcal/mol
p-value: 0.032119

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.7 kcal/mol
p-value: 0.044818

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.7 kcal/mol
p-value: 0.038569

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.7 kcal/mol
p-value: 0.043580

position:  1787
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.1
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -27.3 kcal/mol
p-value: 0.022448

position:  1787
target 5' U    A G             A 3'
           UGCU G CUCUUUUCUGUUG
           ACGA U GAGAGAAGACAGC
miRNA  3' C    G                 5'

target: AT1G53310.1
miRNA: ath-miR780
miRNA: ath-miR780
mfe: -28.6 kcal/mol
p-value: 0.029493

position:  1776
target 5' U                    C 3'
           CCUGC U GCAGUUGCUAGG
           GGACG G UGUCGACGAUCU
miRNA  3' U     A U              5'

target: AT1G53310.1
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -26.0 kcal/mol
p-value: 0.043004

position:  1986
target 5' G               U    C 3'
           GUC GGAAGAGGAGG G GA
           UAG UCUUCUUCUCC C CU
miRNA  3' G   U           U A    5'

target: AT1G53310.1
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -25.0 kcal/mol
p-value: 0.069876

position:  1223
target 5' A               A    C 3'
           UCAACUG CUCAGCA UGGA
           AGUUGAU GAGUUGU GUCU
miRNA  3' C       A       G      5'

target: AT1G53310.2
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.7 kcal/mol
p-value: 0.044181

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.7 kcal/mol
p-value: 0.050086

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.7 kcal/mol
p-value: 0.032268

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.7 kcal/mol
p-value: 0.045041

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.7 kcal/mol
p-value: 0.038779

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.7 kcal/mol
p-value: 0.043799

position:  1804
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.2
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -27.3 kcal/mol
p-value: 0.022589

position:  1804
target 5' U    A G             A 3'
           UGCU G CUCUUUUCUGUUG
           ACGA U GAGAGAAGACAGC
miRNA  3' C    G                 5'

target: AT1G53310.2
miRNA: ath-miR780
miRNA: ath-miR780
mfe: -28.6 kcal/mol
p-value: 0.029660

position:  1793
target 5' U                    C 3'
           CCUGC U GCAGUUGCUAGG
           GGACG G UGUCGACGAUCU
miRNA  3' U     A U              5'

target: AT1G53310.2
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -26.0 kcal/mol
p-value: 0.043224

position:  2003
target 5' G               U    C 3'
           GUC GGAAGAGGAGG G GA
           UAG UCUUCUUCUCC C CU
miRNA  3' G   U           U A    5'

target: AT1G53310.2
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -25.0 kcal/mol
p-value: 0.070251

position:  1240
target 5' A               A    C 3'
           UCAACUG CUCAGCA UGGA
           AGUUGAU GAGUUGU GUCU
miRNA  3' C       A       G      5'

target: AT1G53310.3
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.7 kcal/mol
p-value: 0.045851

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.7 kcal/mol
p-value: 0.052225

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.7 kcal/mol
p-value: 0.033391

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.7 kcal/mol
p-value: 0.046724

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.7 kcal/mol
p-value: 0.040365

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.7 kcal/mol
p-value: 0.045448

position:  1933
target 5' U    A G            G 3'
           UGCU G CUCUUUUCUGUU
           ACGA U GAGAGAAGACAG
miRNA  3' C    G              U 5'

target: AT1G53310.3
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -27.3 kcal/mol
p-value: 0.023654

position:  1933
target 5' U    A G             A 3'
           UGCU G CUCUUUUCUGUUG
           ACGA U GAGAGAAGACAGC
miRNA  3' C    G                 5'

target: AT1G53310.3
miRNA: ath-miR780
miRNA: ath-miR780
mfe: -28.6 kcal/mol
p-value: 0.030922

position:  1922
target 5' U                    C 3'
           CCUGC U GCAGUUGCUAGG
           GGACG G UGUCGACGAUCU
miRNA  3' U     A U              5'

target: AT1G53310.3
miRNA: ath-miR847
miRNA: ath-miR847
mfe: -26.0 kcal/mol
p-value: 0.044880

position:  2132
target 5' G               U    C 3'
           GUC GGAAGAGGAGG G GA
           UAG UCUUCUUCUCC C CU
miRNA  3' G   U           U A    5'

target: AT1G53310.3
miRNA: ath-miR869
miRNA: ath-miR869
mfe: -25.0 kcal/mol
p-value: 0.073085

position:  1369
target 5' A               A    C 3'
           UCAACUG CUCAGCA UGGA
           AGUUGAU GAGUUGU GUCU
miRNA  3' C       A       G      5'

Ortholog Group

Ortholog Groups: OG5_130145

Accession	Taxon
NP_001031178	Arabidopsis thaliana
NP_001031179 ( AT1G53310 )	Arabidopsis thaliana
NP_175738	Arabidopsis thaliana
NP_188112	Arabidopsis thaliana
NP_850372	Arabidopsis thaliana
NP_850373	Arabidopsis thaliana
CME095C	Cyanidioschyzon merolae strain 10D
80312	Chlamydomonas reinhardtii
ACO60676	Micromonas sp. RCC299
NP_001042358	Oryza sativa Japonica Group
NP_001044301	Oryza sativa Japonica Group
NP_001046417	Oryza sativa Japonica Group
NP_001061646	Oryza sativa Japonica Group
NP_001062847	Oryza sativa Japonica Group
estExt_gwp_GeneWisePlus.C_Chr_12.00010388	Ostreococcus tauri
e_gw1.43.132.1	Physcomitrella patens subsp. patens
estExt_Genewise1.C_3410042	Physcomitrella patens subsp. patens
estExt_Genewise1.C_830117	Physcomitrella patens subsp. patens
estExt_fgenesh1_pg.C_1770031	Physcomitrella patens subsp. patens
estExt_fgenesh2_pg.C_910010	Physcomitrella patens subsp. patens
estExt_gwp_gw1.C_290195	Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_169000089	Physcomitrella patens subsp. patens
28753.m000077	Ricinus communis
29634.m002165	Ricinus communis
29645.m000074	Ricinus communis
29983.m003317	Ricinus communis
e_gw1.5.29.1	Thalassiosira pseudonana CCMP1335
estExt_thaps1_ua_kg.C_chr_30296	Thalassiosira pseudonana CCMP1335
XP_002949515	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR30523	0.0	1	967	No hit	NA
Hamap	MF_00595	16.7	23	967	IPR022805	Phosphoenolpyruvate carboxylase, bacterial/plant-type
SUPERFAMILY	SSF51621	0.0	28	912	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain
Pfam	PF00311	7.3E-302	164	967	IPR021135	Phosphoenolpyruvate carboxylase
PRINTS	PR00150	6.0E-83	168	181	IPR021135	Phosphoenolpyruvate carboxylase
ProSitePatterns	PS00781	NA	169	180	IPR018129	Phosphoenolpyruvate carboxylase, active site
PRINTS	PR00150	6.0E-83	221	237	IPR021135	Phosphoenolpyruvate carboxylase
PRINTS	PR00150	6.0E-83	281	296	IPR021135	Phosphoenolpyruvate carboxylase
PRINTS	PR00150	6.0E-83	442	462	IPR021135	Phosphoenolpyruvate carboxylase
PRINTS	PR00150	6.0E-83	591	611	IPR021135	Phosphoenolpyruvate carboxylase
ProSitePatterns	PS00393	NA	593	605	IPR018129	Phosphoenolpyruvate carboxylase, active site
PRINTS	PR00150	6.0E-83	633	662	IPR021135	Phosphoenolpyruvate carboxylase
PRINTS	PR00150	6.0E-83	765	791	IPR021135	Phosphoenolpyruvate carboxylase
SUPERFAMILY	SSF51621	0.0	939	967	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain

Subcellular Localization

Localization

cytosol

Evidence

SUBAcon

Pubmed ID

23180787