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Locus name | LOC_Os09g30400 |
Alias | OsWRKY80 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:WRKY |
Effect for Senescence | Unclear |
Gene Description | WRKY transcription factor in Rice (Oryza sativa L. ssp. indica).Up-regulation of this gene is also observed after dark-induced senescence and drought stress |
Evidence | Molecular evidence:representational difference analysis [Ref 1] |
References | 1: Ricachenevsky FK, Sperotto RA, Menguer PK, Fett JPIdentification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence.Mol. Biol. Rep. 2010 Dec;37(8):3735-45 |
Gene Ontology | |
Sequence | LOC_Os09g30400.1 | Genomic | mRNA | CDS | Protein LOC_Os09g30400.2 | Genomic | mRNA | CDS | Protein LOC_Os09g30400.3 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: LOC_Os09g30400.1 miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol p-value: 0.007047
position: 960 target 5' G C U G 3' GCAGAGCG AGGGC GCGAGG CGUUUUGU UCCCG CGUUUU miRNA 3' A U 5'
target: LOC_Os09g30400.2 miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol p-value: 0.006670
position: 839 target 5' G C U G 3' GCAGAGCG AGGGC GCGAGG CGUUUUGU UCCCG CGUUUU miRNA 3' A U 5'
target: LOC_Os09g30400.3 miRNA: osa-miR2864.1 miRNA: osa-miR2864.1 mfe: -31.5 kcal/mol p-value: 0.005167
position: 351 target 5' G C U G 3' GCAGAGCG AGGGC GCGAGG CGUUUUGU UCCCG CGUUUU miRNA 3' A U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_170302 | |
Cross Link | |
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